Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   C6376_RS06875 Genome accession   NZ_CP028369
Coordinates   1531876..1533285 (+) Length   469 a.a.
NCBI ID   WP_107442604.1    Uniprot ID   -
Organism   Streptomyces sp. P3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1526876..1538285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6376_RS06860 (C6376_06860) - 1527811..1528743 (-) 933 WP_107442601.1 Ppx/GppA phosphatase family protein -
  C6376_RS06865 (C6376_06865) - 1528878..1529684 (+) 807 WP_107442602.1 hypothetical protein -
  C6376_RS06870 (C6376_06870) - 1529818..1531656 (-) 1839 WP_254075853.1 hypothetical protein -
  C6376_RS06875 (C6376_06875) radA/sms 1531876..1533285 (+) 1410 WP_107442604.1 DNA repair protein RadA Machinery gene
  C6376_RS06880 (C6376_06880) disA 1533367..1534491 (+) 1125 WP_057577693.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  C6376_RS06885 (C6376_06885) - 1534598..1535443 (-) 846 WP_173985593.1 hypothetical protein -
  C6376_RS06890 (C6376_06890) - 1535700..1536638 (+) 939 WP_107442605.1 A/G-specific adenine glycosylase -
  C6376_RS06895 (C6376_06895) - 1537053..1537595 (+) 543 WP_057577696.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49630.76 Da        Isoelectric Point: 7.7224

>NTDB_id=240833 C6376_RS06875 WP_107442604.1 1531876..1533285(+) (radA/sms) [Streptomyces sp. P3]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTTSALPIGQVDGRQATARPTGVAEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRMRADRIGAIDDHLYLAAETDLAAVL
GHLDAVKPSLLIVDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGRIPAGMKVLEVADMGDALRVLPRSRRREAPRDAEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=240833 C6376_RS06875 WP_107442604.1 1531876..1533285(+) (radA/sms) [Streptomyces sp. P3]
ATGGCTGCCCGTACGAAGACCACCAAGGACCGCCCGTCCTACCGCTGCACGGAATGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGCACCACGGCGCCGGGGC
GCGTCACCACCTCCGCCCTGCCCATCGGTCAGGTCGACGGGCGGCAGGCCACCGCCCGCCCCACCGGCGTGGCCGAGCTG
GACCGCGTCCTCGGCGGCGGGCTCGTGCCCGGCGCGGTCGTGCTCCTGGCGGGCGAGCCGGGCGTCGGCAAGTCGACCCT
GCTGCTGGACGTGGCCGCCAAGTCGGCGAGCGACGAGCACCGCACCCTGTACGTCACGGGCGAGGAGTCCGCCTCCCAGG
TCCGGATGCGCGCCGACCGCATCGGCGCCATCGACGACCACCTGTACCTCGCGGCGGAGACCGATCTGGCGGCCGTCCTC
GGCCACTTGGACGCGGTCAAGCCGTCCCTGCTGATCGTGGACTCCGTGCAGACCGTGGCCTCCCCGGAGATCGACGGCGC
GCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCGGGTGCCCTGATCCGCGCCTCCAAGGAGCGCGGTATGTCCACGCTGC
TGGTGGGCCATGTCACGAAGGACGGCGCGATCGCCGGCCCGCGTCTCCTCGAGCACCTGGTCGACGTCGTCCTGAGTTTC
GAGGGCGACCGGCACGCGCGGCTGCGCCTGGTGCGCGGCGTCAAGAACCGGTACGGCGCGACCGACGAGGTCGGCTGCTT
CGAACTGCACGATGAGGGCATTACGGGCCTTGCCGACCCGAGCGGACTTTTCCTGACCCGTCGTGACGAACCGGTCCCGG
GTACCTGCCTGACGGTGACCCTGGAGGGCCGCCGGCCCCTGGTCGCCGAGGTGCAGGCGCTCACCGTCGACTCCCAGATC
CCCTCCCCCCGCCGCACGACGTCCGGCCTGGAGACCTCCCGTGTCTCGATGATGCTGGCCGTCCTGGAGCAGCGCGGCCG
GATCACCGCGCTCGGCAAGCGGGACATCTACTCGGCGACGGTCGGCGGTGTGAAGCTGTCGGAGCCCGCCGCGGACCTGG
CCATCGCCCTCGCCCTGGCGTCCGCCGCCAGCGACACCCCGCTGCCCAAGAACCTCGTCGCGATCGGCGAGGTGGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCAGGCTCGCCGAGGCCCACCGCCTGGGCTTCACGCACGCGCTCGT
ACCGGGCGATCCCGGCAGGATCCCGGCGGGCATGAAGGTCCTGGAAGTGGCCGACATGGGGGACGCCCTGCGGGTCCTGC
CGCGCTCCCGTCGCAGAGAGGCCCCGCGGGACGCGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(81-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.584

96.375

0.42
  radA Streptococcus pneumoniae Rx1

42.762

95.736

0.409
  radA Streptococcus pneumoniae D39

42.762

95.736

0.409
  radA Streptococcus pneumoniae R6

42.762

95.736

0.409
  radA Streptococcus pneumoniae TIGR4

42.762

95.736

0.409
  radA Streptococcus mitis SK321

44.235

90.618

0.401
  radA Streptococcus mitis NCTC 12261

44.235

90.618

0.401