Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   C6376_RS00420 Genome accession   NZ_CP028369
Coordinates   127236..128015 (+) Length   259 a.a.
NCBI ID   WP_057575372.1    Uniprot ID   A0ABQ3SAE0
Organism   Streptomyces sp. P3     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 122236..133015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6376_RS00410 (C6376_00410) - 122922..125822 (-) 2901 WP_107441566.1 vitamin B12-dependent ribonucleotide reductase -
  C6376_RS00415 (C6376_00415) nrdR 125987..126574 (-) 588 WP_107448699.1 transcriptional regulator NrdR -
  C6376_RS00420 (C6376_00420) dinR/lexA 127236..128015 (+) 780 WP_057575372.1 transcriptional repressor LexA Regulator
  C6376_RS00425 (C6376_00425) - 128139..130151 (-) 2013 WP_107441567.1 ATP-dependent DNA helicase -
  C6376_RS00430 (C6376_00430) - 130390..131025 (-) 636 WP_254075796.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28035.80 Da        Isoelectric Point: 7.0666

>NTDB_id=240816 C6376_RS00420 WP_057575372.1 127236..128015(+) (dinR/lexA) [Streptomyces sp. P3]
MTTTADSATITAQDRSQGRLEPVHAMNEAMNPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=240816 C6376_RS00420 WP_057575372.1 127236..128015(+) (dinR/lexA) [Streptomyces sp. P3]
GTGACCACCACCGCAGACAGTGCCACCATCACCGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCATGAATCCCGAGGGACACAAGCGTTCCCTGCCGGGCCGACCTCCAGGCATCCGCGCGGACAGCTCGGGACTCA
CGGACCGGCAGCGCCGGGTGATCGAGGTCATCAGGGATTCCGTACAACGGCGCGGCTACCCGCCGTCGATGCGGGAGATC
GGCCAGGCGGTCGGCCTGTCCAGCACCTCCTCGGTCGCACACCAACTCATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
TGACCCGCACCGCCCGCGCGCGTACGAGGTGCGAGGCTCCGACCAGGCGGCCTCGGTGCAGCCCACGGACACCGCCGGCA
AGCCCGCCGCCTCCTACGTGCCGCTGGTCGGCCGGATCGCCGCCGGCGGTCCGATCCTCGCGGAGGAGTCGGTGGAGGAC
GTCTTCCCGCTCCCGAGGCAGCTGGTCGGCGACGGCGAACTGTTCGTGCTGAAGGTCGTCGGGGACTCGATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACCGTACGCCGCCAGCCCGTCGCGGAGAACGGCGACATCGTGGCCGCGATGCTCG
ACGGCGAGGCCACCGTGAAGCGCTTCAAGCGCGAGGACGGCCATGTGTGGCTGCTCCCCCACAACGCCGCCTACGAGCCG
ATCCCCGGCGACGACGCGACGATCCTCGGCAAGGTGGTGGCCGTACTCCGCCGCGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375

Multiple sequence alignment