Detailed information NTG0240790

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CHN49_RS03375
• Genome accession: NZ_CP022561
• Coordinates: 723077..723943 (-)
• Length: 288 a.a.
• NCBI ID: WP_121782822.1
• Uniprot ID: -
• Organism: Pseudomonas putida strain B4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 718077..728943

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CHN49_RS03340 (CHN49_03305)	-	718473..719768 (-)	1296	WP_003247549.1	NAD(P)/FAD-dependent oxidoreductase	-
CHN49_RS03345 (CHN49_03310)	-	719853..720026 (-)	174	WP_008091951.1	DUF3094 domain-containing protein	-
CHN49_RS03350 (CHN49_03315)	-	720159..720788 (-)	630	WP_003247546.1	DUF1780 domain-containing protein	-
CHN49_RS03355 (CHN49_03320)	-	720844..721275 (-)	432	WP_121782820.1	hypothetical protein	-
CHN49_RS03360 (CHN49_03325)	-	721362..722069 (+)	708	WP_121782821.1	energy-coupling factor ABC transporter permease	-
CHN49_RS03365 (CHN49_03330)	yacG	722257..722457 (-)	201	WP_003247540.1	DNA gyrase inhibitor YacG	-
CHN49_RS03370 (CHN49_03335)	coaE	722454..723077 (-)	624	WP_004575721.1	dephospho-CoA kinase	-
CHN49_RS03375 (CHN49_03340)	pilD	723077..723943 (-)	867	WP_121782822.1	A24 family peptidase	Machinery gene
CHN49_RS03380 (CHN49_03345)	-	723946..725154 (-)	1209	WP_121782823.1	type II secretion system F family protein	-
CHN49_RS03385 (CHN49_03350)	-	725371..725781 (+)	411	WP_012051131.1	pilin	-
CHN49_RS03395 (CHN49_03360)	-	726151..727551 (+)	1401	WP_121782824.1	PAAR domain-containing protein	-
CHN49_RS03400 (CHN49_03365)	-	727544..727933 (+)	390	WP_121782825.1	hypothetical protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31822.90 Da
• Isoelectric Point: 7.9101

>NTDB_id=240790 CHN49_RS03375 WP_121782822.1 723077..723943(-) (pilD) [Pseudomonas putida strain B4]
MTLWALLAEQPAYFLTLATVLGLLVGSFINVLVYRLPIMLERQWQREAQEVLGLPTTQHPRFDLCLPASRCPHCAHRIRA
WENIPVISYLALGGRCSSCKNRISLRYPLVEVASALLSLVVAWRFGASVEALLALPLTWCLLALSLIDADHQLLPDVLVL
PTMWLGLIVNAFGIHVPLADALWGAVAGYLSLWTVYWVFRLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LVGLCLLRFRRHALGTAIPFGPYLAIAGWIAVLWGDEIYASYIQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=240790 CHN49_RS03375 WP_121782822.1 723077..723943(-) (pilD) [Pseudomonas putida strain B4]
ATGACTTTATGGGCTTTGCTGGCTGAACAGCCAGCGTATTTCCTCACCCTTGCCACGGTGCTCGGCCTGCTGGTGGGCAG
CTTTATCAACGTGCTGGTGTATCGCCTGCCGATCATGCTGGAGCGCCAATGGCAGCGTGAGGCGCAAGAGGTATTGGGGC
TGCCGACCACGCAGCACCCGCGTTTCGACCTGTGCCTGCCGGCCTCCCGGTGCCCACACTGCGCGCACCGGATTCGTGCG
TGGGAAAACATTCCGGTCATCAGCTACCTGGCCTTGGGCGGGCGCTGTTCGTCCTGCAAAAACCGCATCAGCCTGCGTTA
CCCGCTCGTTGAAGTGGCCAGTGCGCTGCTGTCGCTGGTGGTGGCCTGGCGCTTCGGCGCTTCAGTAGAGGCGTTGCTGG
CGTTGCCGCTGACCTGGTGCCTACTGGCGCTGAGCCTGATCGATGCGGACCACCAGCTGCTGCCGGATGTGCTGGTGCTG
CCGACCATGTGGCTAGGGCTGATCGTCAATGCCTTTGGCATCCATGTGCCCCTGGCCGACGCACTGTGGGGCGCAGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAGGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCA
AGCTGATGGCGCTGATCGGGGCGTGGGGGGGTTGGCAGGTGCTGCCGTTGACGCTGCTGTTGTCGTCGGTGGTGGGGGCG
CTTGTTGGCCTGTGCCTGCTGCGTTTTCGCCGGCATGCCTTGGGCACGGCTATCCCGTTTGGCCCTTATCTGGCAATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATACAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.347	96.181	0.503
pilD	Acinetobacter baumannii D1279779	49.11	97.569	0.479
pilD	Acinetobacter nosocomialis M2	48.399	97.569	0.472
pilD	Vibrio campbellii strain DS40M4	49.815	94.097	0.469
pilD	Neisseria gonorrhoeae MS11	48.699	93.403	0.455