Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   CF389_RS17115 Genome accession   NZ_CP022556
Coordinates   3453330..3454019 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain NJAU-Z9     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3448330..3459019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF389_RS17095 - 3448835..3449911 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  CF389_RS17100 - 3450001..3451215 (-) 1215 WP_003151383.1 LCP family protein -
  CF389_RS17105 - 3451220..3451867 (-) 648 WP_003151384.1 YigZ family protein -
  CF389_RS17110 degS 3452090..3453253 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  CF389_RS17115 degU 3453330..3454019 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CF389_RS17120 - 3454117..3454965 (+) 849 WP_003151387.1 DegV family protein -
  CF389_RS17125 comFA 3455073..3456458 (+) 1386 WP_003151388.1 DEAD/DEAH box helicase Machinery gene
  CF389_RS17130 - 3456516..3456800 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  CF389_RS17135 comFC 3456806..3457495 (+) 690 WP_198317760.1 phosphoribosyltransferase family protein Machinery gene
  CF389_RS17140 - 3457569..3457988 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  CF389_RS17145 flgM 3458058..3458324 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CF389_RS17150 - 3458339..3458821 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=240754 CF389_RS17115 WP_003219701.1 3453330..3454019(+) (degU) [Bacillus velezensis strain NJAU-Z9]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=240754 CF389_RS17115 WP_003219701.1 3453330..3454019(+) (degU) [Bacillus velezensis strain NJAU-Z9]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment