Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   BSG32_RS13680 Genome accession   NZ_CP022552
Coordinates   2680198..2681601 (-) Length   467 a.a.
NCBI ID   WP_005461534.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain MAVP-R     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2675198..2686601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSG32_RS13645 (BSG32_13655) moaE 2675770..2676225 (-) 456 WP_005461480.1 molybdopterin synthase catalytic subunit MoaE -
  BSG32_RS13650 (BSG32_13660) moaD 2676227..2676484 (-) 258 WP_021449856.1 molybdopterin synthase sulfur carrier subunit -
  BSG32_RS13655 (BSG32_13665) moaC 2676481..2676960 (-) 480 WP_005488247.1 cyclic pyranopterin monophosphate synthase MoaC -
  BSG32_RS13660 (BSG32_13670) moaB 2676987..2677499 (-) 513 WP_005461494.1 molybdenum cofactor biosynthesis protein B -
  BSG32_RS13665 (BSG32_13675) moaA 2677602..2678591 (-) 990 WP_005461510.1 GTP 3',8-cyclase MoaA -
  BSG32_RS13670 (BSG32_13680) - 2678887..2679780 (+) 894 WP_021449857.1 YvcK family protein -
  BSG32_RS13675 (BSG32_13685) luxU 2679857..2680195 (-) 339 WP_021449858.1 quorum-sensing phosphorelay protein LuxU -
  BSG32_RS13680 (BSG32_13690) luxO 2680198..2681601 (-) 1404 WP_005461534.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  BSG32_RS13685 (BSG32_13695) uvrB 2681890..2683920 (-) 2031 WP_020841051.1 excinuclease ABC subunit UvrB -
  BSG32_RS13700 (BSG32_13710) rsxA 2684909..2685487 (+) 579 WP_005380762.1 electron transport complex subunit RsxA -
  BSG32_RS13705 (BSG32_13715) rsxB 2685491..2686087 (+) 597 WP_005480813.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52173.71 Da        Isoelectric Point: 6.2547

>NTDB_id=240668 BSG32_RS13680 WP_005461534.1 2680198..2681601(-) (luxO) [Vibrio parahaemolyticus strain MAVP-R]
MQQKTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
VSKLIEPKAMTVSEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=240668 BSG32_RS13680 WP_005461534.1 2680198..2681601(-) (luxO) [Vibrio parahaemolyticus strain MAVP-R]
ATGCAACAAAAAACTGAAGGCCAAAAATCTCGTTACCTTCTGATGGTTGAGGATACAGCATCGGTTGCGGCGTTATACCG
CTCGTACCTCACGCCGTTAGGGATCGACATTAATATTGTCGGTACAGGTAGAGATGCCATTGAAAGCCTCAATCATCGAA
TTCCAGATCTTATTCTTCTCGATCTTCGTCTGCCTGATATGACGGGGATGGATGTTTTGCACGCCGTTAAAAAGAGTCAT
CCAGATGTGCCGATCATTTTCATGACGGCTCATGGCTCTATCGATACAGCGGTAGAAGCGATGCGTCATGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTCTGCGTGTTACGGTCAACAACGCAATTCGCAAAGCAACTAAGCTAAAAA
ATGAAGCAGATAATCCGGGTAATCAGAATTACCAAGGTTTTATCGGCAGCAGCCAAACCATGCAGCAGGTCTATCGCACC
ATTGACTCTGCCGCTAGCAGTAAAGCGAGTATCTTTATTACTGGTGAAAGTGGTACGGGTAAAGAGGTATGCGCAGAAGC
CATCCACGCTGCAAGCAAACGTGGTGATAAGCCGTTTATTGCCATCAACTGTGCAGCCATACCTAAAGACTTAATTGAAA
GTGAACTATTTGGTCACGTAAAAGGGGCATTTACTGGTGCGGCAAATGACCGTCAAGGTGCCGCTGAGTTAGCCGATGGT
GGCACGTTGTTCCTCGATGAATTGTGTGAAATGGATTTGGACCTACAAACCAAATTATTGCGATTCATCCAAACCGGTAC
GTTCCAGAAAGTGGGCTCTTCAAAAATGAAGAGTGTGGACGTGCGCTTCGTTTGTGCGACCAACCGAGACCCTTGGAAAG
AAGTTCAAGAAGGGCGTTTCCGCGAAGACTTATACTACCGTTTATACGTGATTCCTTTGCATCTTCCGCCTCTTCGCGAA
CGTGGTGAAGATGTGATTGAAATTGCGTACTCACTGTTAGGCTATATGTCTCATGAAGAGGGCAAAAACTTTGTCCGCTT
TTCTCAAGAAGTGATTGACCGCTTTAACAGTTATGAGTGGCCGGGTAACGTCCGACAACTACAAAATGTATTGCGTAATA
TCGTGGTGCTCAACAACGGCAAAGAAATTACGCTAGATATGTTGCCACCGCCGCTGAATCAACCATTAGATAGGCCATCT
GTATCTAAACTGATTGAGCCAAAAGCGATGACCGTTTCAGAGATCATGCCACTATGGATGACAGAGAAAATGGCGATTGA
GCAAGCGATTGAGGCGTGTGACGGTAATATTCCAAGAGCCGCTGGGTATCTTGATGTCAGTCCGTCAACGATTTACCGCA
AACTACAAGCATGGAATGGTAAAGAAGAGCGGCAGAAGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.5

95.931

0.839
  pilR Pseudomonas aeruginosa PAK

38.393

95.931

0.368

Multiple sequence alignment