Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   C7M30_RS02635 Genome accession   NZ_CP028218
Coordinates   506373..507398 (-) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain SRCM102756     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 501373..512398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M30_RS02600 (C7M30_00526) panEA 501858..502754 (-) 897 WP_003232206.1 2-dehydropantoate 2-reductase -
  C7M30_RS02605 (C7M30_00527) ylbP 502914..503396 (+) 483 WP_003244940.1 N-acetyltransferase -
  C7M30_RS02610 (C7M30_00528) gerR 503453..504034 (-) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  C7M30_RS02615 (C7M30_00529) rpmF 504180..504359 (-) 180 WP_003154457.1 50S ribosomal protein L32 -
  C7M30_RS02620 (C7M30_00530) ylbN 504381..504899 (-) 519 WP_014479718.1 DUF177 domain-containing protein -
  C7M30_RS02625 (C7M30_00531) - 504927..505112 (+) 186 WP_003232215.1 hypothetical protein -
  C7M30_RS02630 (C7M30_00532) tmcAL 505109..506356 (+) 1248 WP_160243943.1 nucleotidyltransferase -
  C7M30_RS02635 (C7M30_00533) sepM 506373..507398 (-) 1026 WP_003245451.1 protease DdcP Regulator
  C7M30_RS02640 (C7M30_00534) ylbK 507400..508182 (-) 783 WP_003232221.1 patatin family protein -
  C7M30_RS02645 (C7M30_00535) spoVV 508363..509589 (+) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  C7M30_RS02650 (C7M30_00536) coaD 509600..510085 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  C7M30_RS02655 (C7M30_00537) rsmD 510090..510644 (-) 555 WP_160243944.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C7M30_RS02660 (C7M30_00538) ylbG 510967..511239 (-) 273 WP_009967171.1 YlbG family protein -
  C7M30_RS02665 (C7M30_00539) ylbF 511294..511743 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  C7M30_RS02670 (C7M30_00540) ylbE 511859..512098 (-) 240 WP_003232231.1 YlbE-like family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=240458 C7M30_RS02635 WP_003245451.1 506373..507398(-) (sepM) [Bacillus subtilis strain SRCM102756]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=240458 C7M30_RS02635 WP_003245451.1 506373..507398(-) (sepM) [Bacillus subtilis strain SRCM102756]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCTGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402