Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   C7M30_RS02665 Genome accession   NZ_CP028218
Coordinates   511294..511743 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain SRCM102756     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 506294..516743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M30_RS02635 (C7M30_00533) sepM 506373..507398 (-) 1026 WP_003245451.1 protease DdcP Regulator
  C7M30_RS02640 (C7M30_00534) ylbK 507400..508182 (-) 783 WP_003232221.1 patatin family protein -
  C7M30_RS02645 (C7M30_00535) spoVV 508363..509589 (+) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  C7M30_RS02650 (C7M30_00536) coaD 509600..510085 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  C7M30_RS02655 (C7M30_00537) rsmD 510090..510644 (-) 555 WP_160243944.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C7M30_RS02660 (C7M30_00538) ylbG 510967..511239 (-) 273 WP_009967171.1 YlbG family protein -
  C7M30_RS02665 (C7M30_00539) ylbF 511294..511743 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  C7M30_RS02670 (C7M30_00540) ylbE 511859..512098 (-) 240 WP_003232231.1 YlbE-like family protein -
  C7M30_RS02675 (C7M30_00541) ylbD 512114..512512 (-) 399 WP_014476725.1 YlbD family protein -
  C7M30_RS02680 (C7M30_00542) ylbC 512743..513783 (-) 1041 WP_123373535.1 CAP domain-containing protein -
  C7M30_RS02685 (C7M30_00543) ylbB 513867..514313 (-) 447 WP_003221362.1 CBS domain-containing protein -
  C7M30_RS02690 (C7M30_00544) ylbA 514453..514815 (+) 363 WP_003232238.1 YugN family protein -
  C7M30_RS02695 (C7M30_00545) ctaG 514847..515740 (-) 894 WP_046664162.1 cytochrome c oxidase assembly factor CtaG -
  C7M30_RS02700 (C7M30_00546) ctaF 515767..516099 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  C7M30_RS02705 (C7M30_00547) ctaE 516102..516725 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=240459 C7M30_RS02665 WP_003221370.1 511294..511743(-) (ylbF) [Bacillus subtilis strain SRCM102756]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=240459 C7M30_RS02665 WP_003221370.1 511294..511743(-) (ylbF) [Bacillus subtilis strain SRCM102756]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCTATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGCGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1