Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | GK_RS12535 | Genome accession | NC_006510 |
| Coordinates | 2460963..2461259 (-) | Length | 98 a.a. |
| NCBI ID | WP_011231915.1 | Uniprot ID | U2X350 |
| Organism | Geobacillus kaustophilus HTA426 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2455963..2466259
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GK_RS12500 (GK2426) | - | 2456564..2458228 (+) | 1665 | WP_011231908.1 | DEAD/DEAH box helicase | - |
| GK_RS12505 (GK2427) | - | 2458215..2459009 (+) | 795 | WP_011231909.1 | YqhG family protein | - |
| GK_RS12510 (GK2428) | - | 2459112..2459291 (-) | 180 | WP_011231910.1 | YqzE family protein | - |
| GK_RS12515 (GK2429) | comGG | 2459337..2459726 (-) | 390 | WP_011231911.1 | competence type IV pilus minor pilin ComGG | - |
| GK_RS12520 (GK2430) | comGF | 2459801..2460247 (-) | 447 | WP_021322351.1 | competence type IV pilus minor pilin ComGF | - |
| GK_RS12525 (GK2431) | - | 2460226..2460552 (-) | 327 | WP_011231913.1 | type II secretion system protein | - |
| GK_RS12530 (GK2432) | comGD | 2460536..2460973 (-) | 438 | WP_011231914.1 | competence type IV pilus minor pilin ComGD | - |
| GK_RS12535 (GK2433) | comGC | 2460963..2461259 (-) | 297 | WP_011231915.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GK_RS12540 (GK2434) | comGB | 2461462..2462490 (-) | 1029 | WP_041467897.1 | competence type IV pilus assembly protein ComGB | - |
| GK_RS12545 (GK2435) | comGA | 2462487..2463560 (-) | 1074 | WP_011231917.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GK_RS12550 (GK2436) | - | 2463753..2464451 (+) | 699 | WP_011231918.1 | helix-turn-helix transcriptional regulator | - |
| GK_RS12555 (GK2437) | - | 2464610..2464852 (+) | 243 | WP_008879854.1 | DUF2626 family protein | - |
| GK_RS12560 (GK2438) | - | 2464936..2466069 (-) | 1134 | WP_020278526.1 | class I SAM-dependent methyltransferase | - |
Sequence
Protein
Download Length: 98 a.a. Molecular weight: 10749.59 Da Isoelectric Point: 7.2422
>NTDB_id=24045 GK_RS12535 WP_011231915.1 2460963..2461259(-) (comGC) [Geobacillus kaustophilus HTA426]
MNQKGFTLIEMLIVMMVISVLLLIAIPNMTKHNSMINSKGCEAFLNTVQAQVKAYEMEHNKIPTVQELLAGRYIKSDKCP
NGHAIQISANGDVSESGS
MNQKGFTLIEMLIVMMVISVLLLIAIPNMTKHNSMINSKGCEAFLNTVQAQVKAYEMEHNKIPTVQELLAGRYIKSDKCP
NGHAIQISANGDVSESGS
Nucleotide
Download Length: 297 bp
>NTDB_id=24045 GK_RS12535 WP_011231915.1 2460963..2461259(-) (comGC) [Geobacillus kaustophilus HTA426]
ATGAATCAAAAGGGATTCACATTGATCGAAATGTTGATCGTTATGATGGTGATTTCTGTCCTGCTGCTGATTGCCATTCC
GAATATGACAAAGCACAACAGCATGATCAATTCGAAAGGATGCGAGGCGTTTTTGAACACCGTGCAAGCGCAGGTGAAAG
CGTATGAGATGGAGCATAACAAAATTCCGACGGTGCAGGAATTGCTCGCTGGCCGCTATATCAAGTCGGACAAATGTCCG
AACGGTCATGCCATCCAAATCAGCGCGAACGGCGATGTGAGTGAAAGTGGCTCGTAA
ATGAATCAAAAGGGATTCACATTGATCGAAATGTTGATCGTTATGATGGTGATTTCTGTCCTGCTGCTGATTGCCATTCC
GAATATGACAAAGCACAACAGCATGATCAATTCGAAAGGATGCGAGGCGTTTTTGAACACCGTGCAAGCGCAGGTGAAAG
CGTATGAGATGGAGCATAACAAAATTCCGACGGTGCAGGAATTGCTCGCTGGCCGCTATATCAAGTCGGACAAATGTCCG
AACGGTCATGCCATCCAAATCAGCGCGAACGGCGATGTGAGTGAAAGTGGCTCGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
52.747 |
92.857 |
0.49 |
| comGC | Staphylococcus aureus MW2 |
41.935 |
94.898 |
0.398 |
| comGC | Staphylococcus aureus N315 |
41.935 |
94.898 |
0.398 |