Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   CG798_RS02785 Genome accession   NZ_CP022531
Coordinates   523159..523848 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain TB1501     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 518159..528848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG798_RS02750 (CG798_02750) - 518355..518837 (-) 483 WP_003151394.1 flagellar protein FlgN -
  CG798_RS02755 (CG798_02755) flgM 518852..519118 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CG798_RS02760 (CG798_02760) - 519188..519607 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  CG798_RS02765 (CG798_02765) comFC 519681..520370 (-) 690 WP_197200179.1 double zinc ribbon domain-containing protein Machinery gene
  CG798_RS02770 (CG798_02770) - 520376..520660 (-) 285 WP_007407481.1 competence protein ComFB -
  CG798_RS02775 (CG798_02775) - 520718..522104 (-) 1387 Protein_523 DEAD/DEAH box helicase -
  CG798_RS02780 (CG798_02780) - 522213..523061 (-) 849 WP_094031329.1 DegV family protein -
  CG798_RS02785 (CG798_02785) degU 523159..523848 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CG798_RS02790 (CG798_02790) degS 523925..525088 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  CG798_RS02795 (CG798_02795) - 525311..525958 (+) 648 WP_007407485.1 YigZ family protein -
  CG798_RS02800 (CG798_02800) - 525963..527198 (+) 1236 WP_025285355.1 LCP family protein -
  CG798_RS02805 (CG798_02805) - 527297..528373 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=240383 CG798_RS02785 WP_003219701.1 523159..523848(-) (degU) [Bacillus velezensis strain TB1501]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=240383 CG798_RS02785 WP_003219701.1 523159..523848(-) (degU) [Bacillus velezensis strain TB1501]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment