Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CG798_RS02765 Genome accession   NZ_CP022531
Coordinates   519681..520370 (-) Length   229 a.a.
NCBI ID   WP_197200179.1    Uniprot ID   -
Organism   Bacillus velezensis strain TB1501     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 514681..525370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG798_RS02730 (CG798_02730) fliW 514771..515202 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  CG798_RS02735 (CG798_02735) - 515232..515801 (-) 570 WP_007407476.1 DUF6470 family protein -
  CG798_RS02740 (CG798_02740) flgL 515893..516810 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  CG798_RS02745 (CG798_02745) flgK 516822..518339 (-) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  CG798_RS02750 (CG798_02750) - 518355..518837 (-) 483 WP_003151394.1 flagellar protein FlgN -
  CG798_RS02755 (CG798_02755) flgM 518852..519118 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CG798_RS02760 (CG798_02760) - 519188..519607 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  CG798_RS02765 (CG798_02765) comFC 519681..520370 (-) 690 WP_197200179.1 double zinc ribbon domain-containing protein Machinery gene
  CG798_RS02770 (CG798_02770) - 520376..520660 (-) 285 WP_007407481.1 competence protein ComFB -
  CG798_RS02775 (CG798_02775) - 520718..522104 (-) 1387 Protein_523 DEAD/DEAH box helicase -
  CG798_RS02780 (CG798_02780) - 522213..523061 (-) 849 WP_094031329.1 DegV family protein -
  CG798_RS02785 (CG798_02785) degU 523159..523848 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CG798_RS02790 (CG798_02790) degS 523925..525088 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25257.89 Da        Isoelectric Point: 8.0779

>NTDB_id=240382 CG798_RS02765 WP_197200179.1 519681..520370(-) (comFC) [Bacillus velezensis strain TB1501]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTVGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=240382 CG798_RS02765 WP_197200179.1 519681..520370(-) (comFC) [Bacillus velezensis strain TB1501]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAACTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGTGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment