Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C7M29_RS09115 Genome accession   NZ_CP028217
Coordinates   1771528..1772163 (+) Length   211 a.a.
NCBI ID   WP_029318425.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102751     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1766528..1777163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M29_RS09090 (C7M29_01790) liaI 1767655..1768035 (+) 381 WP_014480835.1 cell envelope stress-induced membrane anchor protein LiaI -
  C7M29_RS09095 (C7M29_01791) liaH 1768062..1768739 (+) 678 WP_003228506.1 stress responsive protein LiaH -
  C7M29_RS09100 (C7M29_01792) liaG 1768840..1769712 (+) 873 WP_041333105.1 DUF4097 domain-containing protein -
  C7M29_RS09105 (C7M29_01793) liaF 1769746..1770471 (+) 726 WP_003228510.1 LiaRS two-component regulatory system accessory protein LiaF -
  C7M29_RS09110 (C7M29_01794) liaS 1770468..1771550 (+) 1083 WP_161476722.1 two-component system sensor histidine kinase LiaS -
  C7M29_RS09115 (C7M29_01795) vraR 1771528..1772163 (+) 636 WP_029318425.1 two-component system response regulator LiaR Regulator
  C7M29_RS09120 (C7M29_01796) gerAC 1772171..1773292 (-) 1122 WP_161476723.1 spore germination receptor protein GerAC -
  C7M29_RS09125 (C7M29_01797) gerAB 1773289..1774386 (-) 1098 WP_014480828.1 spore germination receptor protein GerAB -
  C7M29_RS09130 (C7M29_01798) gerAA 1774355..1775803 (-) 1449 WP_014477941.1 spore germination receptor protein GerAA -
  C7M29_RS09135 (C7M29_01799) yvzF 1775921..1776106 (+) 186 WP_003221676.1 YvzF family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23123.77 Da        Isoelectric Point: 5.0163

>NTDB_id=240346 C7M29_RS09115 WP_029318425.1 1771528..1772163(+) (vraR) [Bacillus subtilis strain SRCM102751]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAVELSPDVILMDLVMEGMDGIQATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=240346 C7M29_RS09115 WP_029318425.1 1771528..1772163(+) (vraR) [Bacillus subtilis strain SRCM102751]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTAGCTGTGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTCAAGCTACAAAGCAAATTTGCCGGGAGCTTTCTGACCCGAAAATTATTGTG
CTCACAAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTAGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCGCTTACGAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACCAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACAGAAATCATCTCGTGAATTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.381

99.526

0.521
  degU Bacillus subtilis subsp. subtilis str. 168

38.117

100

0.403