Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CGZ77_RS04900 Genome accession   NZ_CP022527
Coordinates   992489..993292 (+) Length   267 a.a.
NCBI ID   WP_094030985.1    Uniprot ID   -
Organism   Neisseria sp. KEM232     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 987489..998292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ77_RS04880 (CGZ77_04885) - 987522..989450 (+) 1929 WP_009427192.1 ABC-F family ATP-binding cassette domain-containing protein -
  CGZ77_RS04885 (CGZ77_04890) - 989465..989983 (+) 519 WP_232304412.1 hypothetical protein -
  CGZ77_RS04890 (CGZ77_04895) rlmB 990305..991060 (+) 756 WP_009427194.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CGZ77_RS04895 (CGZ77_04900) rluD 991372..992490 (-) 1119 WP_094030984.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CGZ77_RS04900 (CGZ77_04905) comL 992489..993292 (+) 804 WP_094030985.1 outer membrane protein assembly factor BamD Machinery gene
  CGZ77_RS04905 (CGZ77_04910) pdxH 993386..994018 (+) 633 WP_094030986.1 pyridoxamine 5'-phosphate oxidase -
  CGZ77_RS04910 (CGZ77_04915) thiD 994281..995102 (+) 822 WP_094030987.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  CGZ77_RS04915 (CGZ77_04920) - 995376..995861 (-) 486 WP_198344882.1 MFS transporter -
  CGZ77_RS04920 (CGZ77_04925) - 995845..996621 (-) 777 WP_009427204.1 MFS transporter -
  CGZ77_RS04925 (CGZ77_04930) guaD 996638..997942 (-) 1305 WP_094030989.1 guanine deaminase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31020.01 Da        Isoelectric Point: 9.1206

>NTDB_id=240310 CGZ77_RS04900 WP_094030985.1 992489..993292(+) (comL) [Neisseria sp. KEM232]
MKKILLVALLGAALSGCASKGTSDKDAQITQDWSVEKLYAEAQDELNSNNYTRAVKLYELLESRFPQGRYAQQAQLDTAY
AYYKDEEREKALAAVERFQKLHPQHPNMDYALYLKGLILFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVRRYAQS
KYVEDATKRMTKLVDALAGNEMAVARYYAKRGAYLAAANRAQNIVTGFQNTRYVEEALAVMELSYRKMERPQLADDTRRI
LEKNFPQSPYLTRSWKDNDAPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=240310 CGZ77_RS04900 WP_094030985.1 992489..993292(+) (comL) [Neisseria sp. KEM232]
ATGAAAAAAATTCTTTTAGTAGCGTTGCTGGGTGCGGCGCTGTCCGGCTGTGCAAGTAAAGGCACAAGTGACAAAGACGC
GCAAATCACCCAAGACTGGTCGGTGGAAAAACTGTACGCCGAAGCGCAAGACGAGTTGAACAGCAACAATTATACGCGTG
CCGTCAAGTTATATGAACTGCTCGAATCCCGCTTCCCGCAAGGCCGTTACGCGCAGCAGGCGCAGCTTGACACGGCCTAT
GCCTATTACAAGGACGAAGAGCGGGAAAAGGCGCTCGCCGCCGTGGAACGCTTCCAAAAGCTGCACCCGCAGCATCCGAA
CATGGACTACGCCCTTTATCTCAAAGGGCTGATTCTGTTTAACGAAGACCAATCCTTCCTCAACAAACTCGCCTCGCAGG
ACTGGTCCGACCGCGATCCCAAAGCCAACCGAGAAGCCTATCAGGCCTTTGCCGAGCTGGTTCGCCGCTATGCGCAGAGC
AAATACGTCGAAGACGCCACCAAGCGCATGACCAAGCTGGTGGACGCGCTGGCCGGCAACGAAATGGCCGTCGCCCGCTA
CTACGCCAAACGCGGCGCCTACCTCGCCGCCGCCAACCGGGCGCAAAACATCGTCACCGGCTTCCAAAACACCCGCTATG
TCGAAGAAGCGCTGGCCGTGATGGAACTCTCCTACCGCAAAATGGAGCGCCCGCAGCTTGCCGACGACACCCGCCGCATC
TTGGAAAAAAACTTCCCGCAAAGCCCCTACCTGACCCGCTCGTGGAAAGACAACGACGCCCCCTGGTGGCGTTATTGGAA
ATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

77.444

99.625

0.772
  comL Neisseria meningitidis MC58

77.068

99.625

0.768

Multiple sequence alignment