Detailed information NTG0240278

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CGU45_RS11500
• Genome accession: NZ_CP022526
• Coordinates: 2410288..2411160 (+)
• Length: 290 a.a.
• NCBI ID: WP_021264129.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain Ocean-1155
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2405288..2416160

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CGU45_RS11485 (CGU45_11485)	pilA	2406679..2407128 (-)	450	WP_021264133.1	pilin	Machinery gene
CGU45_RS11490 (CGU45_11490)	pilB	2407360..2409060 (+)	1701	WP_021264132.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CGU45_RS11495 (CGU45_11495)	pilC	2409064..2410284 (+)	1221	WP_023101565.1	type 4a pilus biogenesis protein PilC	Machinery gene
CGU45_RS11500 (CGU45_11500)	pilD	2410288..2411160 (+)	873	WP_021264129.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
CGU45_RS11505 (CGU45_11505)	coaE	2411157..2411768 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
CGU45_RS11510 (CGU45_11510)	yacG	2411765..2411965 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
CGU45_RS11515 (CGU45_11515)	-	2412002..2412211 (-)	210	WP_003094660.1	hypothetical protein	-
CGU45_RS11520 (CGU45_11520)	-	2412317..2413006 (-)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
CGU45_RS11525 (CGU45_11525)	-	2413003..2413473 (-)	471	WP_003094664.1	hypothetical protein	-
CGU45_RS11530 (CGU45_11530)	-	2413470..2413895 (-)	426	WP_021264128.1	GNAT family N-acetyltransferase	-
CGU45_RS11535 (CGU45_11535)	-	2414028..2414657 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
CGU45_RS11540 (CGU45_11540)	-	2414654..2415103 (+)	450	WP_021264127.1	MOSC domain-containing protein	-
CGU45_RS11545 (CGU45_11545)	-	2415129..2415299 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31823.84 Da
• Isoelectric Point: 7.3860

>NTDB_id=240278 CGU45_RS11500 WP_021264129.1 2410288..2411160(+) (pilD) [Pseudomonas aeruginosa strain Ocean-1155]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPSSACPHCGHEIR
PWENIPLVSYLALGGKCSSCKATIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=240278 CGU45_RS11500 WP_021264129.1 2410288..2411160(+) (pilD) [Pseudomonas aeruginosa strain Ocean-1155]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCAGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAGTTCGGCGTGCCCGCACTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCACCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.071	96.552	0.541
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472