Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C7M27_RS01580 Genome accession   NZ_CP028213
Coordinates   330691..331326 (+) Length   211 a.a.
NCBI ID   WP_021480575.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102749     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 325691..336326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M27_RS01555 (C7M27_00313) liaI 326818..327198 (+) 381 WP_003243447.1 cell envelope stress-induced membrane anchor protein LiaI -
  C7M27_RS01560 (C7M27_00314) liaH 327225..327902 (+) 678 WP_015714684.1 stress responsive protein LiaH -
  C7M27_RS01565 (C7M27_00315) liaG 328003..328875 (+) 873 WP_128740721.1 DUF4097 domain-containing protein -
  C7M27_RS01570 (C7M27_00316) liaF 328909..329634 (+) 726 WP_100505807.1 LiaRS two-component regulatory system accessory protein LiaF -
  C7M27_RS01575 (C7M27_00317) liaS 329631..330713 (+) 1083 WP_128740720.1 two-component system sensor histidine kinase LiaS -
  C7M27_RS01580 (C7M27_00318) vraR 330691..331326 (+) 636 WP_021480575.1 two-component system response regulator LiaR Regulator
  C7M27_RS01585 (C7M27_00319) gerAC 331334..332455 (-) 1122 WP_021480574.1 spore germination receptor protein GerAC -
  C7M27_RS01590 (C7M27_00320) gerAB 332452..333549 (-) 1098 WP_021480573.1 spore germination receptor protein GerAB -
  C7M27_RS01595 (C7M27_00321) gerAA 333518..334966 (-) 1449 WP_032726836.1 spore germination receptor protein GerAA -
  C7M27_RS01600 (C7M27_00322) yvzF 335084..335269 (+) 186 WP_003221676.1 YvzF family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23110.77 Da        Isoelectric Point: 5.0313

>NTDB_id=239998 C7M27_RS01580 WP_021480575.1 330691..331326(+) (vraR) [Bacillus subtilis strain SRCM102749]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAAELSPDVILMDLVMEGMDGIEATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=239998 C7M27_RS01580 WP_021480575.1 330691..331326(+) (vraR) [Bacillus subtilis strain SRCM102749]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGCGGAACTGTCGCCGGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTGAAGCTACAAAGCAAATTTGCCGGGAGCTTTCCGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCGCTGACGAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACCAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCGCATCGAAATCATCTCGTCAAATAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(148-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.857

99.526

0.526
  degU Bacillus subtilis subsp. subtilis str. 168

38.393

100

0.408

Multiple sequence alignment