Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   C7M26_RS14050 Genome accession   NZ_CP028212
Coordinates   2666072..2666302 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain SRCM102748     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2661072..2671302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M26_RS14040 (C7M26_02763) spoVT 2661797..2662333 (-) 537 WP_003218365.1 stage V sporulation protein T -
  C7M26_RS14045 (C7M26_02764) mfd 2662469..2666002 (-) 3534 WP_032723084.1 transcription-repair coupling factor -
  C7M26_RS14050 (C7M26_02765) subA/fin 2666072..2666302 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  C7M26_RS14055 (C7M26_02766) pth 2666362..2666928 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  C7M26_RS14060 (C7M26_02767) rplYB 2667035..2667649 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  C7M26_RS14065 (C7M26_02768) prsS 2667734..2668687 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  C7M26_RS14070 (C7M26_02769) glmU 2668710..2670080 (-) 1371 WP_015715104.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  C7M26_RS14075 (C7M26_02770) spoVG 2670273..2670566 (-) 294 WP_003218346.1 septation regulator SpoVG -
  C7M26_RS14080 (C7M26_02771) ridA 2670761..2671138 (-) 378 WP_015715103.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=239934 C7M26_RS14050 WP_003243417.1 2666072..2666302(-) (subA/fin) [Bacillus subtilis strain SRCM102748]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=239934 C7M26_RS14050 WP_003243417.1 2666072..2666302(-) (subA/fin) [Bacillus subtilis strain SRCM102748]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment