Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   CG450_RS20470 Genome accession   NZ_CP022477
Coordinates   3918862..3919260 (+) Length   132 a.a.
NCBI ID   WP_003178808.1    Uniprot ID   -
Organism   Bacillus licheniformis strain BL-010     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3913862..3924260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG450_RS20445 - 3914540..3915280 (+) 741 WP_003178817.1 ribonuclease YeeF family protein -
  CG450_RS20450 - 3915396..3917099 (+) 1704 WP_003178816.1 methyl-accepting chemotaxis protein -
  CG450_RS20455 - 3917119..3917922 (-) 804 WP_003178814.1 serine/threonine protein kinase -
  CG450_RS20460 - 3917928..3918131 (-) 204 WP_003178812.1 hypothetical protein -
  CG450_RS20465 nucA/comI 3918398..3918844 (+) 447 WP_003178810.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CG450_RS20470 nin/comJ 3918862..3919260 (+) 399 WP_003178808.1 competence protein ComJ Regulator
  CG450_RS20475 - 3919299..3920735 (-) 1437 WP_003178806.1 glycoside hydrolase family 1 protein -
  CG450_RS20480 - 3920805..3921530 (-) 726 WP_003178804.1 AAA family ATPase -
  CG450_RS20485 - 3921627..3922178 (-) 552 WP_003178803.1 NAD(P)H-dependent oxidoreductase -
  CG450_RS20490 - 3922362..3923237 (+) 876 WP_003178801.1 transporter substrate-binding domain-containing protein -
  CG450_RS20495 - 3923249..3923932 (+) 684 WP_003178799.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14990.03 Da        Isoelectric Point: 5.6435

>NTDB_id=239922 CG450_RS20470 WP_003178808.1 3918862..3919260(+) (nin/comJ) [Bacillus licheniformis strain BL-010]
MIKKWEAQEMTMSYHQFTVYQKGGKPPVMDWTDEDIKRGYTTGEHAVSFEALENTASSVEVRLNAQKQVPSFNRRVTVPF
EVLYDGVEIASVLSKKLTCDIPQGAYQLTCYTIMPDHSGTAQITYLLDFKQA

Nucleotide


Download         Length: 399 bp        

>NTDB_id=239922 CG450_RS20470 WP_003178808.1 3918862..3919260(+) (nin/comJ) [Bacillus licheniformis strain BL-010]
TTGATCAAAAAGTGGGAAGCACAAGAAATGACGATGTCATACCATCAGTTTACCGTTTATCAGAAAGGCGGAAAGCCGCC
CGTTATGGATTGGACAGACGAGGATATTAAAAGAGGATATACAACGGGAGAGCACGCGGTCTCGTTTGAAGCTCTCGAAA
ACACGGCATCTTCAGTAGAAGTCCGTTTGAATGCCCAAAAACAGGTGCCCTCCTTCAACAGGCGCGTCACCGTTCCTTTC
GAAGTGCTTTATGACGGGGTCGAAATTGCAAGCGTTCTATCCAAGAAATTGACATGCGATATTCCGCAAGGCGCCTATCA
GCTGACATGCTATACAATAATGCCTGATCACAGCGGCACTGCACAGATCACCTATCTTCTCGATTTTAAACAGGCTTGA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

50

96.97

0.485

Multiple sequence alignment