Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   C7M26_RS06380 Genome accession   NZ_CP028212
Coordinates   1192968..1193993 (-) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain SRCM102748     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1187968..1198993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M26_RS06345 (C7M26_01248) panEA 1188453..1189349 (-) 897 WP_003232206.1 2-dehydropantoate 2-reductase -
  C7M26_RS06350 (C7M26_01249) ylbP 1189509..1189991 (+) 483 WP_003244940.1 N-acetyltransferase -
  C7M26_RS06355 (C7M26_01250) gerR 1190048..1190629 (-) 582 WP_003232210.1 sporulation specific transcriptional regulator GerR -
  C7M26_RS06360 (C7M26_01251) rpmF 1190775..1190954 (-) 180 WP_003154457.1 50S ribosomal protein L32 -
  C7M26_RS06365 (C7M26_01252) ylbN 1190976..1191494 (-) 519 WP_003232214.1 DUF177 domain-containing protein -
  C7M26_RS06370 (C7M26_01253) - 1191522..1191707 (+) 186 WP_003232215.1 hypothetical protein -
  C7M26_RS06375 (C7M26_01254) tmcAL 1191704..1192951 (+) 1248 WP_003244707.1 nucleotidyltransferase -
  C7M26_RS06380 (C7M26_01255) sepM 1192968..1193993 (-) 1026 WP_003245451.1 protease DdcP Regulator
  C7M26_RS06385 (C7M26_01256) ylbK 1193995..1194777 (-) 783 WP_003232221.1 patatin family protein -
  C7M26_RS06390 (C7M26_01257) spoVV 1194958..1196184 (+) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  C7M26_RS06395 (C7M26_01258) coaD 1196195..1196680 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  C7M26_RS06400 (C7M26_01259) rsmD 1196685..1197239 (-) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C7M26_RS06405 (C7M26_01260) ylbG 1197562..1197834 (-) 273 WP_009967171.1 YlbG family protein -
  C7M26_RS06410 (C7M26_01261) ylbF 1197889..1198338 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  C7M26_RS06415 (C7M26_01262) ylbE 1198454..1198693 (-) 240 WP_003232231.1 YlbE-like family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=239877 C7M26_RS06380 WP_003245451.1 1192968..1193993(-) (sepM) [Bacillus subtilis strain SRCM102748]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=239877 C7M26_RS06380 WP_003245451.1 1192968..1193993(-) (sepM) [Bacillus subtilis strain SRCM102748]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGTC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCATTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAATCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACGATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402