Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   C7M26_RS06410 Genome accession   NZ_CP028212
Coordinates   1197889..1198338 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain SRCM102748     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1192889..1203338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M26_RS06380 (C7M26_01255) sepM 1192968..1193993 (-) 1026 WP_003245451.1 protease DdcP Regulator
  C7M26_RS06385 (C7M26_01256) ylbK 1193995..1194777 (-) 783 WP_003232221.1 patatin family protein -
  C7M26_RS06390 (C7M26_01257) spoVV 1194958..1196184 (+) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  C7M26_RS06395 (C7M26_01258) coaD 1196195..1196680 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  C7M26_RS06400 (C7M26_01259) rsmD 1196685..1197239 (-) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C7M26_RS06405 (C7M26_01260) ylbG 1197562..1197834 (-) 273 WP_009967171.1 YlbG family protein -
  C7M26_RS06410 (C7M26_01261) ylbF 1197889..1198338 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  C7M26_RS06415 (C7M26_01262) ylbE 1198454..1198693 (-) 240 WP_003232231.1 YlbE-like family protein -
  C7M26_RS06420 (C7M26_01263) ylbD 1198709..1199107 (-) 399 WP_003232233.1 YlbD family protein -
  C7M26_RS06425 (C7M26_01264) ylbC 1199337..1200377 (-) 1041 WP_032721504.1 CAP domain-containing protein -
  C7M26_RS06430 (C7M26_01265) ylbB 1200461..1200907 (-) 447 WP_003221362.1 CBS domain-containing protein -
  C7M26_RS06435 (C7M26_01266) ylbA 1201047..1201409 (+) 363 WP_003232238.1 YugN family protein -
  C7M26_RS06440 (C7M26_01267) ctaG 1201441..1202334 (-) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  C7M26_RS06445 (C7M26_01268) ctaF 1202361..1202693 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  C7M26_RS06450 (C7M26_01269) ctaE 1202696..1203319 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=239878 C7M26_RS06410 WP_003221370.1 1197889..1198338(-) (ylbF) [Bacillus subtilis strain SRCM102748]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=239878 C7M26_RS06410 WP_003221370.1 1197889..1198338(-) (ylbF) [Bacillus subtilis strain SRCM102748]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGTTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1