Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C7M23_RS19280 Genome accession   NZ_CP028209
Coordinates   3767042..3767689 (-) Length   215 a.a.
NCBI ID   WP_015252479.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102745     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3762042..3772689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M23_RS19255 (C7M23_03789) nsrR 3763639..3764079 (+) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -
  C7M23_RS19260 (C7M23_03790) lytF 3764232..3765698 (+) 1467 WP_122895221.1 peptidoglycan endopeptidase LytF -
  C7M23_RS19265 (C7M23_03791) yhdC 3765740..3766063 (-) 324 WP_014476269.1 YqzG/YhdC family protein -
  C7M23_RS19270 (C7M23_03792) yhdB 3766264..3766506 (+) 243 WP_003233373.1 YhdB family protein -
  C7M23_RS19275 (C7M23_03793) yhdA 3766521..3767045 (-) 525 WP_131227260.1 FMN-dependent NADPH-azoreductase -
  C7M23_RS19280 (C7M23_03794) vraR 3767042..3767689 (-) 648 WP_015252479.1 two-component system response regulator YhcZ Regulator
  C7M23_RS19285 (C7M23_03795) yhcY 3767686..3768825 (-) 1140 WP_131227259.1 two-component system sensor histidine kinase YhcY -
  C7M23_RS19290 (C7M23_03796) pgcA 3768974..3770719 (-) 1746 WP_021479677.1 phosphoglucomutase -
  C7M23_RS19295 (C7M23_03797) glpD 3770849..3772516 (-) 1668 WP_131227258.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24149.78 Da        Isoelectric Point: 6.3034

>NTDB_id=239825 C7M23_RS19280 WP_015252479.1 3767042..3767689(-) (vraR) [Bacillus subtilis strain SRCM102745]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=239825 C7M23_RS19280 WP_015252479.1 3767042..3767689(-) (vraR) [Bacillus subtilis strain SRCM102745]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTCGTCGGAGAAGCTGCAACTGGATTAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCAAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGACCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

37.611

100

0.395