Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   C7M23_RS16290 Genome accession   NZ_CP028209
Coordinates   3204534..3205556 (-) Length   340 a.a.
NCBI ID   WP_131227384.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102745     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3199534..3210556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M23_RS16255 (C7M23_03195) ylbP 3200394..3200876 (+) 483 WP_014476736.1 N-acetyltransferase -
  C7M23_RS16260 (C7M23_03196) gerR 3200933..3201514 (-) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  C7M23_RS16265 (C7M23_03197) rpmF 3201660..3201839 (-) 180 WP_003154457.1 50S ribosomal protein L32 -
  C7M23_RS16270 (C7M23_03198) ylbN 3201861..3202379 (-) 519 WP_014479718.1 DUF177 domain-containing protein -
  C7M23_RS16275 (C7M23_03199) - 3202407..3202592 (+) 186 WP_131227386.1 hypothetical protein -
  C7M23_RS16280 (C7M23_03200) - 3202589..3203821 (+) 1233 WP_131227385.1 nucleotidyltransferase -
  C7M23_RS16285 (C7M23_03201) - 3203894..3204343 (+) 450 WP_128737830.1 hypothetical protein -
  C7M23_RS16290 (C7M23_03202) sepM 3204534..3205556 (-) 1023 WP_131227384.1 protease DdcP Regulator
  C7M23_RS16295 (C7M23_03203) ylbK 3205558..3206340 (-) 783 WP_003232221.1 patatin family protein -
  C7M23_RS16300 (C7M23_03204) spoVV 3206521..3207747 (+) 1227 WP_029726517.1 dipicolinic acid transporter SpoVV -
  C7M23_RS16305 (C7M23_03205) coaD 3207758..3208243 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  C7M23_RS16310 (C7M23_03206) rsmD 3208248..3208802 (-) 555 WP_021479346.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C7M23_RS16315 (C7M23_03207) ylbG 3209125..3209397 (-) 273 WP_015715839.1 YlbG family protein -
  C7M23_RS16320 (C7M23_03208) ylbF 3209452..3209901 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  C7M23_RS16325 (C7M23_03209) ylbE 3210017..3210256 (-) 240 WP_003232231.1 YlbE-like family protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37564.15 Da        Isoelectric Point: 6.5347

>NTDB_id=239794 C7M23_RS16290 WP_131227384.1 3204534..3205556(-) (sepM) [Bacillus subtilis strain SRCM102745]
MLRKKHFSWMLIILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKS

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=239794 C7M23_RS16290 WP_131227384.1 3204534..3205556(-) (sepM) [Bacillus subtilis strain SRCM102745]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCATCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGATGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCTGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGTTAA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(60-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.429

100

0.406