Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BGM07_RS25375 Genome accession   NZ_CP022473
Coordinates   3327174..3328286 (-) Length   370 a.a.
NCBI ID   WP_031776304.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain MAVP-Q     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3322174..3333286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGM07_RS25345 (BGM07_025390) hemF 3322635..3323552 (-) 918 WP_021449063.1 oxygen-dependent coproporphyrinogen oxidase -
  BGM07_RS25350 (BGM07_025395) - 3323600..3324157 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  BGM07_RS25355 (BGM07_025400) purE 3324357..3324842 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  BGM07_RS25360 (BGM07_025405) - 3324847..3325974 (+) 1128 WP_031776305.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  BGM07_RS25365 (BGM07_025410) - 3326044..3326613 (-) 570 WP_021449061.1 type I DNA topoisomerase -
  BGM07_RS25370 (BGM07_025415) - 3326692..3327171 (-) 480 WP_005461440.1 DUF494 family protein -
  BGM07_RS25375 (BGM07_025420) dprA 3327174..3328286 (-) 1113 WP_031776304.1 DNA-processing protein DprA Machinery gene
  BGM07_RS25380 (BGM07_025425) - 3328270..3329364 (-) 1095 WP_021449058.1 LysM peptidoglycan-binding domain-containing protein -
  BGM07_RS25385 (BGM07_025430) def 3329503..3330021 (+) 519 WP_005461416.1 peptide deformylase -
  BGM07_RS25390 (BGM07_025435) fmt 3330055..3331002 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  BGM07_RS25395 (BGM07_025440) rsmB 3331083..3332366 (+) 1284 WP_021449057.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39918.54 Da        Isoelectric Point: 6.4129

>NTDB_id=239783 BGM07_RS25375 WP_031776304.1 3327174..3328286(-) (dprA) [Vibrio parahaemolyticus strain MAVP-Q]
MKPRNNDSDLAAWLKLSCLPGIGGIKMNKLLAKDTPRNIISSSSDQLYQLGLTNKQLQAWASVDKEVDACFTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHVYPARHRGLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=239783 BGM07_RS25375 WP_031776304.1 3327174..3328286(-) (dprA) [Vibrio parahaemolyticus strain MAVP-Q]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGATCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAGTTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGTCGACAAAGAGGTCGATGCTTGTTTTACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCTAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATGTTTATCCTGCTCGTCA
TCGTGGTTTAGCGCAGCGAGTAACAGAGAATGGAGCTCTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGAGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCCAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.595

100

0.846
  dprA Vibrio cholerae strain A1552

58.919

100

0.589
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Legionella pneumophila strain ERS1305867

47.561

88.649

0.422
  dprA Haemophilus influenzae Rd KW20

45.104

91.081

0.411
  dprA Neisseria meningitidis strain C311

37.692

100

0.397
  dprA Neisseria meningitidis MC58

37.692

100

0.397
  dprA Neisseria gonorrhoeae MS11

35.825

100

0.376
  dprA Neisseria gonorrhoeae strain FA1090

35.567

100

0.373

Multiple sequence alignment