Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   C7M23_RS15285 Genome accession   NZ_CP028209
Coordinates   2974030..2974461 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain SRCM102745     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2969030..2979461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M23_RS15275 (C7M23_02999) hexA 2970522..2973098 (-) 2577 WP_003231832.1 DNA mismatch repair protein MutS Machinery gene
  C7M23_RS15280 (C7M23_03000) cotE 2973231..2973776 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  C7M23_RS15285 (C7M23_03001) ymcA 2974030..2974461 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  C7M23_RS15290 (C7M23_03002) miaB 2974463..2975992 (-) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  C7M23_RS15295 (C7M23_03003) kbl 2976140..2977318 (-) 1179 WP_106073925.1 glycine C-acetyltransferase -
  C7M23_RS15300 (C7M23_03004) tdh 2977331..2978374 (-) 1044 WP_106073924.1 L-threonine 3-dehydrogenase -
  C7M23_RS15305 (C7M23_03005) spoVS 2978640..2978900 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=239783 C7M23_RS15285 WP_003231834.1 2974030..2974461(-) (ymcA) [Bacillus subtilis strain SRCM102745]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=239783 C7M23_RS15285 WP_003231834.1 2974030..2974461(-) (ymcA) [Bacillus subtilis strain SRCM102745]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment