Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BGM07_RS24690 Genome accession   NZ_CP022473
Coordinates   3196567..3197292 (+) Length   241 a.a.
NCBI ID   WP_021448951.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain MAVP-Q     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3191567..3202292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGM07_RS24675 (BGM07_024720) - 3192670..3194991 (+) 2322 WP_021449011.1 Tex family protein -
  BGM07_RS24680 (BGM07_024725) - 3195127..3195591 (-) 465 WP_005459035.1 hypothetical protein -
  BGM07_RS24685 (BGM07_024730) bioH 3195715..3196482 (-) 768 WP_021448994.1 pimeloyl-ACP methyl ester esterase BioH -
  BGM07_RS24690 (BGM07_024735) comF 3196567..3197292 (+) 726 WP_021448951.1 ComF family protein Machinery gene
  BGM07_RS24695 (BGM07_024740) nfuA 3197390..3197974 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  BGM07_RS24700 (BGM07_024745) nudE 3198195..3198764 (+) 570 WP_021448936.1 ADP compounds hydrolase NudE -
  BGM07_RS24705 (BGM07_024750) cysQ 3198806..3199633 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  BGM07_RS24710 (BGM07_024755) - 3199919..3200680 (-) 762 WP_021486905.1 type II secretion system protein N -
  BGM07_RS24715 (BGM07_024760) - 3200682..3201173 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27720.89 Da        Isoelectric Point: 8.9991

>NTDB_id=239782 BGM07_RS24690 WP_021448951.1 3196567..3197292(+) (comF) [Vibrio parahaemolyticus strain MAVP-Q]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQIWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHAQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=239782 BGM07_RS24690 WP_021448951.1 3196567..3197292(+) (comF) [Vibrio parahaemolyticus strain MAVP-Q]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAATATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTATTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCACAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
CTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATAGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGAGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment