Detailed information NTG0239726

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: CG015_RS08750
• Genome accession: NZ_CP022468
• Coordinates: 1921175..1922599 (+)
• Length: 474 a.a.
• NCBI ID: WP_129532568.1
• Uniprot ID: -
• Organism: Vibrio anguillarum strain MHK3
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1916175..1927599

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CG015_RS08735 (CG015_08745)	-	1916576..1918534 (-)	1959	WP_088732567.1	methyl-accepting chemotaxis protein	-
CG015_RS08740 (CG015_08750)	-	1918752..1919435 (+)	684	WP_129532567.1	NAD(P)H-binding protein	-
CG015_RS08745 (CG015_08755)	-	1919656..1921023 (+)	1368	WP_026028454.1	L-cystine transporter	-
CG015_RS08750 (CG015_08760)	sbcB	1921175..1922599 (+)	1425	WP_129532568.1	exodeoxyribonuclease I	Machinery gene
CG015_RS08755 (CG015_08765)	-	1922724..1923056 (+)	333	WP_033197434.1	CidA/LrgA family protein	-
CG015_RS08760 (CG015_08770)	-	1923056..1923736 (+)	681	WP_010319624.1	CidB/LrgB family autolysis modulator	-
CG015_RS08765 (CG015_08775)	cdd	1923945..1924832 (+)	888	WP_129532569.1	cytidine deaminase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54589.06 Da
• Isoelectric Point: 5.4372

>NTDB_id=239726 CG015_RS08750 WP_129532568.1 1921175..1922599(+) (sbcB) [Vibrio anguillarum strain MHK3]
MRQEHPPTFFFLDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPADYLPSPEAALITGITPQKAVAQGLPEP
EFIAKIHQQLATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGINWPENDEGFT
SFKLEHLSVANGIEHANAHDAMADVIATIELAKKVKAAQPKLFDYFFNMRHKRKLNDLIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVVDLAKNPQPLIDLSSEELHQRLYTKREELAEDELPVPIKLVHLNKCPILAPAKTLTAENAD
HIGVDRNLCLEHLALIKQYPEIREKLIGLYTIEREYKHGDDVDTQLYDGFFSPADKAAMEIIRQADPVNLAALDISFSDK
RIEPLLFRYRARHYPLTLSDEEQRRWATHCRDYFESHLEEYMLNLENLVHTHSSDEKKMAILKSVYRYVEDIAS

Nucleotide

• Length: 1425 bp

>NTDB_id=239726 CG015_RS08750 WP_129532568.1 1921175..1922599(+) (sbcB) [Vibrio anguillarum strain MHK3]
ATGCGACAAGAGCACCCGCCTACTTTCTTTTTCCTCGACTATGAGACGTGGGGAGTCAACCCTGCGAAAGATCGTCCGAG
CCAATTTGCGGGCGTTCGCACCGATATGGATTTTAATATTATTGGCGAACCACTGGTCATCTATTGCCAACCACCAGCGG
ACTATCTGCCTTCTCCAGAAGCGGCGCTTATTACGGGTATCACTCCACAAAAAGCGGTGGCCCAAGGCTTGCCAGAGCCT
GAATTTATCGCCAAAATTCATCAACAACTCGCCACACCCAACACCACCAGTCTTGGTTACAACAGTATTCGTTTTGATGA
TGAAGTAACGCGTTACACTTGCTATCGTAATTTCATTGATCCGTATGCTTGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATTTACTTGATGTGATGCGCGCCTGCCATGCGCTACGCCCAGAAGGCATCAACTGGCCCGAAAATGACGAAGGCTTTACC
AGTTTTAAGCTGGAGCATCTCTCAGTTGCCAATGGCATCGAACATGCGAATGCCCACGATGCTATGGCCGATGTTATCGC
CACCATTGAGCTAGCCAAAAAAGTAAAAGCCGCCCAACCCAAGTTGTTTGATTACTTTTTTAACATGCGCCATAAACGCA
AACTCAATGATCTGATTGATATCGTCAACATGACACCTTTAATGCACGTATCGGGTATGTTAGGCCGAGAATGCCAATAT
ACCAGTTGGATCGTGCCGATTGCTTGGCATCCCACCAATCAAAATGCGGTTATTGTGGTGGACCTTGCCAAAAACCCTCA
ACCCCTGATCGATTTAAGCAGCGAAGAACTGCATCAACGTCTATATACCAAACGCGAAGAGTTGGCAGAAGATGAATTGC
CAGTGCCCATCAAATTAGTGCATCTCAATAAATGCCCTATCCTTGCGCCGGCCAAAACATTAACGGCCGAAAATGCAGAC
CATATCGGGGTCGATAGAAACCTGTGCCTTGAACACTTAGCGCTCATCAAGCAGTACCCAGAGATCAGAGAAAAGCTGAT
TGGCCTCTACACCATTGAGCGAGAATATAAACACGGTGACGATGTCGATACTCAACTCTACGACGGTTTCTTCTCTCCGG
CCGACAAAGCGGCGATGGAGATCATTCGCCAAGCTGACCCTGTCAACCTCGCCGCATTAGACATTAGTTTTAGCGATAAG
CGCATCGAACCCTTGCTGTTTCGCTACCGCGCTCGCCATTACCCATTGACATTAAGTGACGAAGAGCAAAGACGTTGGGC
AACTCACTGTCGTGATTATTTCGAAAGCCACCTTGAAGAGTACATGCTCAATTTAGAGAACTTAGTTCACACCCACAGCA
GTGACGAAAAGAAAATGGCTATTTTAAAATCCGTTTACCGTTATGTCGAAGACATCGCGAGTTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	81.395	99.789	0.812