Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   CG015_RS05775 Genome accession   NZ_CP022468
Coordinates   1248463..1249869 (+) Length   468 a.a.
NCBI ID   WP_026028620.1    Uniprot ID   -
Organism   Vibrio anguillarum strain MHK3     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1243463..1254869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG015_RS05760 (CG015_05760) - 1244178..1245404 (-) 1227 WP_129532384.1 integrase domain-containing protein -
  CG015_RS05770 (CG015_05770) uvrB 1246191..1248221 (+) 2031 WP_041769234.1 excinuclease ABC subunit UvrB -
  CG015_RS05775 (CG015_05775) luxO 1248463..1249869 (+) 1407 WP_026028620.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  CG015_RS05780 (CG015_05780) luxU 1249874..1250212 (+) 339 WP_017048414.1 quorum-sensing phosphorelay protein LuxU -
  CG015_RS05785 (CG015_05785) - 1250209..1251099 (-) 891 WP_013857260.1 YvcK family protein -
  CG015_RS05790 (CG015_05790) moaA 1251411..1252400 (+) 990 WP_026028246.1 GTP 3',8-cyclase MoaA -
  CG015_RS05795 (CG015_05795) moaB 1252468..1252980 (+) 513 WP_010320682.1 molybdenum cofactor biosynthesis protein B -
  CG015_RS05800 (CG015_05800) moaC 1252991..1253491 (+) 501 WP_010320681.1 cyclic pyranopterin monophosphate synthase MoaC -
  CG015_RS05805 (CG015_05805) moaD 1253484..1253729 (+) 246 WP_019280831.1 molybdopterin synthase sulfur carrier subunit -
  CG015_RS05810 (CG015_05810) moaE 1253732..1254202 (+) 471 WP_038148363.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52170.57 Da        Isoelectric Point: 5.8892

>NTDB_id=239720 CG015_RS05775 WP_026028620.1 1248463..1249869(+) (luxO) [Vibrio anguillarum strain MHK3]
MQPDFSLQKAKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLAYREPDLILLDLRLPDMTGMDVLHAVKSHY
PNVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEAGNPGNQNYQGFIGSSQTMQSVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKGFVRLAPEVVERFTRYEWPGNVRQLQNVLRNVVVLNHGNEIELSMLPPPLNQVVDNKI
RLANLTTDTRKENITVHDIFPLWMTEKQAIEQAIEACDGNIPKAASYLDVSPSTIYRKLQAWNSRENS

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=239720 CG015_RS05775 WP_026028620.1 1248463..1249869(+) (luxO) [Vibrio anguillarum strain MHK3]
ATGCAACCTGATTTTTCTCTACAAAAGGCTAAATATCTTTTGATGGTGGAAGATACGGCTTCCGTTGCGGCGCTGTATCG
TTCATACCTCACCCCCCTTGAAATCGATATCAATATTGTTGGTACAGGTCGTGATGCGATAGAGAGTTTAGCTTACCGAG
AGCCGGACCTCATATTGCTGGATCTTCGATTACCCGATATGACGGGCATGGACGTTTTACATGCTGTGAAAAGTCACTAC
CCCAATGTGCCAGTGATATTCATGACCGCTCATGGTTCGATTGATACCGCAGTGGAAGCGATGCGTCACGGTGCCCAAGA
TTTCTTGATCAAACCTTGTGAAGCAGACCGCTTGCGCGTCACGGTTAACAACGCCATACGTAAAGCTAGCAAACTAAAAA
ATGAGGCTGGTAACCCGGGTAATCAGAACTACCAAGGTTTTATCGGCAGCAGTCAAACCATGCAATCAGTCTATCGAACC
ATTGACTCAGCGGCCTCCAGTAAAGCCAGTATTTTTATTACTGGCGAGAGTGGCACGGGTAAAGAGGTGTGTGCAGAAGC
GATTCATGCGGCCAGTAAACGTGGCGATAAACCCTTCATTGCGATTAACTGCGCCGCCATTCCTAAAGACTTAATAGAGA
GTGAACTCTTTGGCCACGTGAAAGGCGCATTTACTGGCGCAGCGACCGATCGCCAAGGCGCAGCCGAGTTGGCTGATGGC
GGCACACTGTTTTTGGATGAACTGTGTGAAATGGATTTGGATTTGCAGACCAAGCTGTTGCGCTTTATCCAAACGGGCAC
ATTCCAGAAAGTGGGCTCATCGAAGATGAAAAGTGTCGATGTTCGTTTTGTCTGCGCTACCAACCGCGATCCATGGAAAG
AGGTACAAGAGGGTCGTTTTCGTGAAGATTTGTACTATCGTCTTTATGTGATCCCATTGCATTTACCACCGCTACGCGAG
CGAGGCGATGACGTTATTGAAATTGCTTACTCTTTGCTCGGCTTTATGTCTAAAGAAGAAGGCAAAGGTTTTGTCCGCTT
AGCGCCAGAGGTTGTGGAGCGTTTTACGCGCTATGAATGGCCGGGTAATGTGCGTCAACTGCAAAACGTGTTGCGGAATG
TGGTGGTATTGAACCACGGCAACGAGATCGAACTGAGCATGTTACCCCCACCGCTAAATCAAGTCGTGGATAACAAGATC
CGATTAGCAAACCTAACGACGGATACGCGCAAGGAAAATATAACCGTGCACGATATTTTTCCTTTATGGATGACGGAAAA
ACAAGCCATCGAACAAGCGATAGAAGCGTGTGATGGTAATATTCCTAAAGCAGCCAGTTATTTAGACGTTAGCCCTTCAA
CGATCTACCGCAAGCTTCAAGCGTGGAACAGTAGAGAGAACTCATAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.832

96.581

0.848
  pilR Pseudomonas aeruginosa PAK

38.178

98.504

0.376

Multiple sequence alignment