Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C7M17_RS19870 Genome accession   NZ_CP028202
Coordinates   3820528..3821163 (+) Length   211 a.a.
NCBI ID   WP_046160834.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102754     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3815528..3826163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M17_RS19845 (C7M17_03920) liaI 3816655..3817035 (+) 381 WP_003243447.1 cell envelope stress-induced membrane anchor protein LiaI -
  C7M17_RS19850 (C7M17_03921) liaH 3817062..3817739 (+) 678 WP_015714684.1 stress responsive protein LiaH -
  C7M17_RS19855 (C7M17_03922) liaG 3817840..3818712 (+) 873 WP_029318424.1 DUF4097 domain-containing protein -
  C7M17_RS19860 (C7M17_03923) liaF 3818746..3819471 (+) 726 WP_014480832.1 LiaRS two-component regulatory system accessory protein LiaF -
  C7M17_RS19865 (C7M17_03924) liaS 3819468..3820550 (+) 1083 WP_015251253.1 two-component system sensor histidine kinase LiaS -
  C7M17_RS19870 (C7M17_03925) vraR 3820528..3821163 (+) 636 WP_046160834.1 two-component system response regulator LiaR Regulator
  C7M17_RS19875 (C7M17_03926) gerAC 3821171..3822292 (-) 1122 WP_046160833.1 spore germination receptor protein GerAC -
  C7M17_RS19880 (C7M17_03927) gerAB 3822289..3823386 (-) 1098 WP_009968145.1 spore germination receptor protein GerAB -
  C7M17_RS19885 (C7M17_03928) gerAA 3823355..3824803 (-) 1449 WP_033884692.1 spore germination receptor protein GerAA -
  C7M17_RS19890 (C7M17_03929) yvzF 3824921..3825106 (+) 186 WP_003244599.1 YvzF family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23095.72 Da        Isoelectric Point: 5.0163

>NTDB_id=239669 C7M17_RS19870 WP_046160834.1 3820528..3821163(+) (vraR) [Bacillus subtilis strain SRCM102754]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAAELSPDVILMDLVMEGMDGIQATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=239669 C7M17_RS19870 WP_046160834.1 3820528..3821163(+) (vraR) [Bacillus subtilis strain SRCM102754]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGCGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTCAAGCTACAAAGCAAATTTGCCGGGAGCTTTCTGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGTTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCGCTTACAAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACGAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACCGAAATCATCTCGTGAATTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.381

99.526

0.521
  degU Bacillus subtilis subsp. subtilis str. 168

38.117

100

0.403