Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   TRNA_RS38060 Genome accession   NC_006270
Coordinates   3209742..3210611 (-) Length   289 a.a.
NCBI ID   WP_011198252.1    Uniprot ID   Q8VQ63
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3204742..3215611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS38025 (BL02603) - 3204783..3205172 (-) 390 WP_003184847.1 hotdog fold thioesterase -
  TRNA_RS38030 (BL02604) comA 3205189..3205827 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  TRNA_RS38035 - 3205914..3207101 (-) 1188 Protein_3271 sensor histidine kinase -
  TRNA_RS38045 (BL05319) - 3207189..3208351 (+) 1163 WP_085959889.1 IS3 family transposase -
  TRNA_RS38050 comP 3208381..3209523 (-) 1143 WP_223307056.1 PDZ domain-containing protein Regulator
  TRNA_RS38055 (BL02607) comX 3209563..3209727 (-) 165 WP_011198251.1 competence pheromone ComX -
  TRNA_RS38060 (BL02608) comQ 3209742..3210611 (-) 870 WP_011198252.1 polyprenyl synthetase family protein Regulator
  TRNA_RS38065 (BL02609) degQ 3210800..3210940 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  TRNA_RS38075 (BL05320) - 3211426..3211773 (+) 348 WP_009329512.1 hypothetical protein -
  TRNA_RS38080 (BL02610) - 3211816..3213036 (-) 1221 WP_003184864.1 EAL and HDOD domain-containing protein -
  TRNA_RS38085 (BL02611) - 3213215..3214684 (-) 1470 WP_003184866.1 nicotinate phosphoribosyltransferase -
  TRNA_RS38090 (BL02612) - 3214702..3215253 (-) 552 WP_003184868.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 32743.41 Da        Isoelectric Point: 4.6799

>NTDB_id=23953 TRNA_RS38060 WP_011198252.1 3209742..3210611(-) (comQ) [Bacillus licheniformis DSM 13 = ATCC 14580]
MNHFIDLEIPNADLNRTLHAFLDAKDQLHFSELAFYHYQSFGGTDTDAAETLGAGIELLILAFDIFDDLEDEDSPDEPWM
KINRSVAMNAATALYTISIKVIGSVSKEPVFFEKLMEYTLQSMQGQHDDLSNRPATEDECLDMIKRKSGALTALPCVLGA
MLATGKFDPTVEKYAYQLGIASQIENDYKALFYDSKSDIAKKKRTLAYLYLSRKFNQPSIDLLKTFETEDKIADKEIKCY
KEKLKAAGVTQYMYVMNQLAIQKFKKGIGELELGDMEKERLMSTLLNNN

Nucleotide


Download         Length: 870 bp        

>NTDB_id=23953 TRNA_RS38060 WP_011198252.1 3209742..3210611(-) (comQ) [Bacillus licheniformis DSM 13 = ATCC 14580]
ATGAATCATTTTATAGACCTTGAGATTCCCAATGCGGACTTAAATCGGACGCTGCACGCTTTTCTAGATGCAAAGGACCA
GTTGCATTTCAGCGAGCTTGCTTTTTATCATTACCAAAGTTTCGGCGGCACGGACACCGATGCGGCAGAAACCCTTGGAG
CAGGCATTGAACTCTTGATTCTTGCGTTTGATATATTCGATGATTTAGAGGATGAAGACAGCCCCGATGAACCTTGGATG
AAAATCAACCGTTCAGTCGCAATGAATGCGGCGACTGCGCTTTATACAATAAGCATTAAAGTGATCGGTTCGGTGTCGAA
AGAACCGGTGTTTTTCGAAAAGCTAATGGAATATACACTTCAATCGATGCAGGGACAGCATGACGATCTCAGCAACCGCC
CTGCCACTGAAGATGAGTGCCTTGACATGATCAAGCGTAAATCCGGGGCGCTGACAGCCTTGCCATGCGTGCTGGGAGCT
ATGCTTGCTACGGGCAAATTTGACCCGACGGTTGAAAAGTACGCCTACCAGCTGGGCATTGCTTCACAAATTGAAAATGA
TTATAAAGCACTTTTTTATGATTCAAAAAGCGATATCGCCAAGAAAAAGCGGACGCTTGCGTATTTATATTTGTCAAGAA
AATTTAACCAGCCGTCGATTGATTTGTTAAAAACATTTGAAACTGAGGATAAAATTGCCGATAAAGAAATAAAATGCTAT
AAAGAGAAATTGAAGGCAGCAGGCGTCACTCAGTATATGTATGTTATGAATCAGCTCGCTATTCAGAAATTTAAGAAGGG
AATCGGGGAGCTTGAGTTGGGGGATATGGAGAAAGAACGTTTGATGTCTACCCTGCTGAATAACAATTAA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(41-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8VQ63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45.361

100

0.457

Multiple sequence alignment