Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   CGZ78_RS07075 Genome accession   NZ_CP022440
Coordinates   1382591..1383769 (-) Length   392 a.a.
NCBI ID   WP_089563063.1    Uniprot ID   -
Organism   Campylobacter jejuni strain 81-176_G1_B0     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1377591..1388769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ78_RS07045 (CGZ78_07055) - 1378131..1378472 (+) 342 WP_002869194.1 hypothetical protein -
  CGZ78_RS07050 (CGZ78_07060) flgM 1378535..1378732 (+) 198 WP_089563061.1 flagellar biosynthesis anti-sigma factor FlgM -
  CGZ78_RS07055 (CGZ78_07065) - 1378775..1379209 (+) 435 WP_002779263.1 flagellar protein FlgN -
  CGZ78_RS07060 (CGZ78_07070) flgK 1379219..1381045 (+) 1827 WP_089563062.1 flagellar hook-associated protein FlgK -
  CGZ78_RS07065 (CGZ78_07075) - 1381062..1381826 (+) 765 WP_002851318.1 TIGR02757 family protein -
  CGZ78_RS07070 (CGZ78_07080) - 1381830..1382594 (+) 765 WP_002851426.1 TSUP family transporter -
  CGZ78_RS07075 (CGZ78_07085) ctsF 1382591..1383769 (-) 1179 WP_089563063.1 type II secretion system F family protein Machinery gene
  CGZ78_RS07080 (CGZ78_07090) ctsE 1383766..1385325 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  CGZ78_RS07085 (CGZ78_07095) ctsX 1385315..1385902 (-) 588 WP_002851370.1 membrane protein Machinery gene
  CGZ78_RS07090 (CGZ78_07100) ctsP 1385906..1386514 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  CGZ78_RS07095 (CGZ78_07105) ctsD 1386507..1387919 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CGZ78_RS07100 (CGZ78_07110) ctsR 1387897..1388208 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 45650.25 Da        Isoelectric Point: 9.0938

>NTDB_id=239501 CGZ78_RS07075 WP_089563063.1 1382591..1383769(-) (ctsF) [Campylobacter jejuni strain 81-176_G1_B0]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNF

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=239501 CGZ78_RS07075 WP_089563063.1 1382591..1383769(-) (ctsF) [Campylobacter jejuni strain 81-176_G1_B0]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGTTCGGGGGTCAATTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

99.235

100

0.992

Multiple sequence alignment