Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   CGZ78_RS07100 Genome accession   NZ_CP022440
Coordinates   1387897..1388208 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain 81-176_G1_B0     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1382897..1393208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ78_RS07080 (CGZ78_07090) ctsE 1383766..1385325 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  CGZ78_RS07085 (CGZ78_07095) ctsX 1385315..1385902 (-) 588 WP_002851370.1 membrane protein Machinery gene
  CGZ78_RS07090 (CGZ78_07100) ctsP 1385906..1386514 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  CGZ78_RS07095 (CGZ78_07105) ctsD 1386507..1387919 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CGZ78_RS07100 (CGZ78_07110) ctsR 1387897..1388208 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  CGZ78_RS07105 (CGZ78_07115) nifJ 1388232..1391792 (-) 3561 WP_002869199.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  CGZ78_RS07110 (CGZ78_07120) - 1391885..1392526 (-) 642 WP_002869201.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=239506 CGZ78_RS07100 WP_002855438.1 1387897..1388208(-) (ctsR) [Campylobacter jejuni strain 81-176_G1_B0]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=239506 CGZ78_RS07100 WP_002855438.1 1387897..1388208(-) (ctsR) [Campylobacter jejuni strain 81-176_G1_B0]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment