Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   C7M16_RS17190 Genome accession   NZ_CP028201
Coordinates   3405735..3406868 (-) Length   377 a.a.
NCBI ID   WP_014478242.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102753     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3400735..3411868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M16_RS17150 (C7M16_03383) ywnA 3400867..3401268 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  C7M16_RS17155 (C7M16_03384) ureC 3401403..3403112 (-) 1710 WP_160221873.1 urease subunit alpha -
  C7M16_RS17160 (C7M16_03385) ureB 3403109..3403483 (-) 375 WP_003227726.1 urease subunit beta -
  C7M16_RS17165 (C7M16_03386) ureA 3403480..3403797 (-) 318 WP_003227724.1 urease subunit gamma -
  C7M16_RS17170 - 3403992..3404152 (-) 161 Protein_3380 hypothetical protein -
  C7M16_RS20800 - 3404404..3404628 (-) 225 Protein_3381 urea ABC transporter substrate-binding protein -
  C7M16_RS17180 (C7M16_03388) csbD 3404841..3405029 (-) 189 WP_128422439.1 stress response protein CsbD -
  C7M16_RS17185 (C7M16_03389) - 3405102..3405581 (-) 480 WP_003244390.1 hypothetical protein -
  C7M16_RS17190 (C7M16_03391) rapC 3405735..3406868 (-) 1134 WP_014478242.1 response regulator aspartate phosphatase RapB Regulator
  C7M16_RS17195 (C7M16_03392) moaA 3407061..3408086 (-) 1026 WP_160221874.1 GTP 3',8-cyclase MoaA -
  C7M16_RS17200 (C7M16_03393) fdhD 3408102..3408890 (-) 789 WP_015714864.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  C7M16_RS17205 (C7M16_03394) - 3409123..3409284 (-) 162 WP_003227706.1 hypothetical protein -
  C7M16_RS17210 (C7M16_03395) ywmD 3409379..3410053 (-) 675 WP_085185544.1 VWA domain-containing protein -
  C7M16_RS17215 - 3410106..3410246 (-) 141 WP_014478246.1 hypothetical protein -
  C7M16_RS17220 (C7M16_03396) ywmC 3410377..3411060 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45055.21 Da        Isoelectric Point: 4.7975

>NTDB_id=239506 C7M16_RS17190 WP_014478242.1 3405735..3406868(-) (rapC) [Bacillus subtilis strain SRCM102753]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSQAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=239506 C7M16_RS17190 WP_014478242.1 3405735..3406868(-) (rapC) [Bacillus subtilis strain SRCM102753]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCCAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424

Multiple sequence alignment