Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C7M16_RS15285 Genome accession   NZ_CP028201
Coordinates   3019863..3020498 (-) Length   211 a.a.
NCBI ID   WP_021480575.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102753     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3014863..3025498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M16_RS15265 (C7M16_03008) yvzF 3015919..3016104 (-) 186 WP_003221676.1 YvzF family protein -
  C7M16_RS15270 (C7M16_03009) gerAA 3016223..3017671 (+) 1449 WP_049139666.1 spore germination receptor protein GerAA -
  C7M16_RS15275 (C7M16_03010) gerAB 3017640..3018737 (+) 1098 WP_137201011.1 spore germination receptor protein GerAB -
  C7M16_RS15280 (C7M16_03011) gerAC 3018734..3019855 (+) 1122 WP_137201013.1 spore germination receptor protein GerAC -
  C7M16_RS15285 (C7M16_03012) vraR 3019863..3020498 (-) 636 WP_021480575.1 two-component system response regulator LiaR Regulator
  C7M16_RS15290 (C7M16_03013) liaS 3020476..3021558 (-) 1083 WP_049139671.1 two-component system sensor histidine kinase LiaS -
  C7M16_RS15295 (C7M16_03014) liaF 3021555..3022280 (-) 726 WP_014480832.1 LiaRS two-component regulatory system accessory protein LiaF -
  C7M16_RS15300 (C7M16_03015) liaG 3022314..3023186 (-) 873 WP_021480578.1 DUF4097 domain-containing protein -
  C7M16_RS15305 (C7M16_03016) liaH 3023287..3023964 (-) 678 WP_015714684.1 stress responsive protein LiaH -
  C7M16_RS15310 (C7M16_03017) liaI 3023991..3024371 (-) 381 WP_003228504.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23110.77 Da        Isoelectric Point: 5.0313

>NTDB_id=239494 C7M16_RS15285 WP_021480575.1 3019863..3020498(-) (vraR) [Bacillus subtilis strain SRCM102753]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAAELSPDVILMDLVMEGMDGIEATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=239494 C7M16_RS15285 WP_021480575.1 3019863..3020498(-) (vraR) [Bacillus subtilis strain SRCM102753]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAGGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGCGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTGAAGCTACAAAGCAAATTTGCCGGGAGCTTTCCGACCCGAAAATTATTGTA
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCGCTTACGAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACCAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTATACGCACATCGAAACCATCTCGTAAAATAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(148-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.857

99.526

0.526
  degU Bacillus subtilis subsp. subtilis str. 168

38.393

100

0.408