Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   C7M16_RS13440 Genome accession   NZ_CP028201
Coordinates   2669401..2670405 (-) Length   334 a.a.
NCBI ID   WP_003229285.1    Uniprot ID   P25144
Organism   Bacillus subtilis strain SRCM102753     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 2664401..2675405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M16_RS13415 (C7M16_02647) acuA 2665328..2665960 (+) 633 WP_014477669.1 acetoin utilization protein acetyltransferase AcuA -
  C7M16_RS13420 (C7M16_02648) acuB 2665987..2666631 (+) 645 WP_160221749.1 acetoin utilization AcuB family protein -
  C7M16_RS13425 (C7M16_02649) acuC 2666628..2667791 (+) 1164 WP_015251447.1 acetoin utilization protein AcuC -
  C7M16_RS13430 (C7M16_02650) motS 2667802..2668530 (-) 729 WP_160221750.1 flagellar motor protein MotS -
  C7M16_RS13435 (C7M16_02651) motP 2668520..2669338 (-) 819 WP_160221983.1 flagellar motor protein MotP -
  C7M16_RS13440 (C7M16_02652) ccpA 2669401..2670405 (-) 1005 WP_003229285.1 catabolite control protein A Regulator
  C7M16_RS13445 (C7M16_02653) aroX 2670681..2671757 (-) 1077 WP_003223454.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  C7M16_RS13450 (C7M16_02654) ytxJ 2671994..2672320 (-) 327 WP_015251445.1 bacillithiol system redox-active protein YtxJ -
  C7M16_RS13455 (C7M16_02655) ytxH 2672344..2672799 (-) 456 WP_004398549.1 YtxH domain-containing protein -
  C7M16_RS13460 (C7M16_02656) ytxG 2672830..2673252 (-) 423 WP_003229276.1 DUF948 domain-containing protein -
  C7M16_RS13465 (C7M16_02657) murC 2673414..2674712 (-) 1299 WP_003229274.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=239486 C7M16_RS13440 WP_003229285.1 2669401..2670405(-) (ccpA) [Bacillus subtilis strain SRCM102753]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=239486 C7M16_RS13440 WP_003229285.1 2669401..2670405(-) (ccpA) [Bacillus subtilis strain SRCM102753]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGGAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGACTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCA
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCTCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCGTTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTCGGCATTATCCATGCTGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGCTTTGATAATACAAGATTAAGCCTCATGGTTCGTCCGCAGCTTTCAACAGTTGTTCAGC
CGACATATGATATTGGCGCCGTTGCGATGAGACTGTTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATAGAGCTAAGAAAGTCAACCAAGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539

  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503


Multiple sequence alignment