Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   CGZ78_RS02900 Genome accession   NZ_CP022440
Coordinates   548768..549418 (-) Length   216 a.a.
NCBI ID   WP_002857159.1    Uniprot ID   -
Organism   Campylobacter jejuni strain 81-176_G1_B0     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 543768..554418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ78_RS02865 (CGZ78_02865) - 544146..545150 (+) 1005 WP_024088100.1 hypothetical protein -
  CGZ78_RS02870 (CGZ78_02870) tlyA 545147..545908 (+) 762 WP_002868894.1 TlyA family RNA methyltransferase -
  CGZ78_RS02875 (CGZ78_02875) ribF 545874..546728 (+) 855 WP_011812722.1 bifunctional riboflavin kinase/FAD synthetase -
  CGZ78_RS02880 (CGZ78_02880) cmoA 546715..547425 (+) 711 WP_079254181.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  CGZ78_RS02885 (CGZ78_02885) - 547415..547636 (-) 222 WP_079005306.1 EexN family lipoprotein -
  CGZ78_RS02890 (CGZ78_02890) - 547627..548067 (-) 441 WP_002868898.1 EexN family lipoprotein -
  CGZ78_RS02895 (CGZ78_02895) - 548125..548757 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  CGZ78_RS02900 (CGZ78_02900) CJE0566 548768..549418 (-) 651 WP_002857159.1 DNA/RNA non-specific endonuclease Regulator
  CGZ78_RS02905 (CGZ78_02905) nth 549415..550041 (-) 627 WP_002857170.1 endonuclease III -
  CGZ78_RS02910 (CGZ78_02910) peb4 550122..550943 (+) 822 WP_002856774.1 peptidylprolyl isomerase PEB4 -
  CGZ78_RS02915 (CGZ78_02915) fbaA 550943..552007 (+) 1065 WP_002856965.1 class II fructose-bisphosphate aldolase -
  CGZ78_RS02920 (CGZ78_02920) - 552102..553544 (+) 1443 WP_002857090.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25504.28 Da        Isoelectric Point: 9.8188

>NTDB_id=239486 CGZ78_RS02900 WP_002857159.1 548768..549418(-) (CJE0566) [Campylobacter jejuni strain 81-176_G1_B0]
MKIFIFLLAISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSSYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNNENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=239486 CGZ78_RS02900 WP_002857159.1 548768..549418(-) (CJE0566) [Campylobacter jejuni strain 81-176_G1_B0]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAAGCTTCAAATTTAAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTAGTTACACACGAGGACACACTGCGCC
TAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGCAATATTACCCCACAAATTGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTTCAAAGTATCGAGGTTTTAAAT
TTGGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATAATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.543

91.204

0.634

Multiple sequence alignment