Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   CGZ70_RS07325 Genome accession   NZ_CP022439
Coordinates   1413450..1413767 (-) Length   105 a.a.
NCBI ID   WP_002851255.1    Uniprot ID   Q0P8E2
Organism   Campylobacter jejuni strain 11168H/lacY     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1408450..1418767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ70_RS07305 (CGZ70_07310) ctsE 1409319..1410878 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  CGZ70_RS07310 (CGZ70_07315) ctsX 1410868..1411455 (-) 588 WP_002851370.1 membrane protein Machinery gene
  CGZ70_RS07315 (CGZ70_07320) ctsP 1411459..1412067 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  CGZ70_RS07320 (CGZ70_07325) ctsD 1412060..1413478 (-) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CGZ70_RS07325 (CGZ70_07330) ctsR 1413450..1413767 (-) 318 WP_002851255.1 hypothetical protein Machinery gene
  CGZ70_RS07330 (CGZ70_07335) nifJ 1413791..1417351 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  CGZ70_RS07335 (CGZ70_07340) - 1417444..1418085 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 12702.64 Da        Isoelectric Point: 5.8722

>NTDB_id=239479 CGZ70_RS07325 WP_002851255.1 1413450..1413767(-) (ctsR) [Campylobacter jejuni strain 11168H/lacY]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKINININ

Nucleotide


Download         Length: 318 bp        

>NTDB_id=239479 CGZ70_RS07325 WP_002851255.1 1413450..1413767(-) (ctsR) [Campylobacter jejuni strain 11168H/lacY]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8E2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

98.095

0.981

Multiple sequence alignment