Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   C7M16_RS12560 Genome accession   NZ_CP028201
Coordinates   2487070..2487765 (-) Length   231 a.a.
NCBI ID   WP_015251546.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102753     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2482070..2492765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M16_RS12535 (C7M16_02471) minD 2483006..2483812 (-) 807 WP_014664846.1 septum site-determining protein MinD -
  C7M16_RS12540 (C7M16_02472) minC 2483814..2484494 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  C7M16_RS12545 (C7M16_02473) mreD 2484547..2485065 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  C7M16_RS12550 (C7M16_02474) mreC 2485062..2485934 (-) 873 WP_032677108.1 rod shape-determining protein MreC -
  C7M16_RS12555 (C7M16_02475) mreB 2485965..2486978 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  C7M16_RS12560 (C7M16_02476) ysxA/radC 2487070..2487765 (-) 696 WP_015251546.1 DNA repair protein RadC Machinery gene
  C7M16_RS12565 (C7M16_02477) maf 2487802..2488371 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  C7M16_RS12570 (C7M16_02478) spoIIB 2488524..2489522 (-) 999 WP_003229644.1 stage II sporulation protein SpoIIB -
  C7M16_RS12575 (C7M16_02479) comC 2489649..2490401 (-) 753 WP_080010571.1 A24 family peptidase Machinery gene
  C7M16_RS12580 (C7M16_02480) folC 2490540..2491832 (-) 1293 WP_160221718.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26165.52 Da        Isoelectric Point: 8.3195

>NTDB_id=239478 C7M16_RS12560 WP_015251546.1 2487070..2487765(-) (ysxA/radC) [Bacillus subtilis strain SRCM102753]
MVIRDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=239478 C7M16_RS12560 WP_015251546.1 2487070..2487765(-) (ysxA/radC) [Bacillus subtilis strain SRCM102753]
TTGGTCATACGCGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424

Multiple sequence alignment