Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C7A99_RS09040 Genome accession   NZ_CP028192
Coordinates   1739503..1740240 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain CFSAN018748     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1734503..1745240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A99_RS09000 (C7A99_08985) - 1735801..1736910 (+) 1110 WP_099548381.1 phage late control D family protein -
  C7A99_RS09005 (C7A99_08990) - 1736953..1737213 (+) 261 WP_000488107.1 ogr/Delta-like zinc finger family protein -
  C7A99_RS09015 (C7A99_09000) - 1737405..1737545 (+) 141 WP_032140709.1 Hok/Gef family protein -
  C7A99_RS09020 (C7A99_09005) - 1737795..1737992 (+) 198 WP_001353016.1 Com family DNA-binding transcriptional regulator -
  C7A99_RS09025 (C7A99_09010) - 1737937..1738743 (+) 807 WP_000215751.1 site-specific DNA-methyltransferase -
  C7A99_RS09030 (C7A99_09015) raiA 1738894..1739235 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C7A99_RS09040 (C7A99_09025) comL 1739503..1740240 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C7A99_RS09045 (C7A99_09030) rluD 1740375..1741355 (+) 981 WP_000079108.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C7A99_RS09050 (C7A99_09035) yfiH 1741352..1742083 (+) 732 WP_107235720.1 purine nucleoside phosphorylase YfiH -
  C7A99_RS09055 (C7A99_09040) clpC 1742213..1744786 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=239340 C7A99_RS09040 WP_000197686.1 1739503..1740240(-) (comL) [Escherichia coli strain CFSAN018748]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=239340 C7A99_RS09040 WP_000197686.1 1739503..1740240(-) (comL) [Escherichia coli strain CFSAN018748]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376