Detailed information NTG0023927

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: TRNA_RS34615
• Genome accession: NC_006270
• Coordinates: 2555315..2555752 (-)
• Length: 145 a.a.
• NCBI ID: WP_009327905.1
• Uniprot ID: Q8VQ70
• Organism: Bacillus licheniformis DSM 13 = ATCC 14580
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2550315..2560752

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
TRNA_RS34565 (BL05264)	sinI	2550484..2550660 (+)	177	WP_003183444.1	anti-repressor SinI	Regulator
TRNA_RS34570 (BL01552)	sinR	2550694..2551029 (+)	336	WP_006637528.1	transcriptional regulator SinR	Regulator
TRNA_RS34575 (BL01563)	tasA	2551134..2551928 (-)	795	WP_003183447.1	biofilm matrix protein TasA	-
TRNA_RS34580 (BL01564)	sipW	2552002..2552586 (-)	585	WP_003183449.1	signal peptidase I SipW	-
TRNA_RS34585 (BL01565)	tapA	2552583..2553311 (-)	729	WP_011198112.1	amyloid fiber anchoring/assembly protein TapA	-
TRNA_RS34590 (BL01553)	-	2553588..2553908 (+)	321	WP_003183454.1	YqzG/YhdC family protein	-
TRNA_RS34595 (BL05265)	-	2553938..2554120 (-)	183	WP_003183456.1	YqzE family protein	-
TRNA_RS34600 (BL01566)	comGG	2554209..2554574 (-)	366	WP_003183459.1	competence type IV pilus minor pilin ComGG	-
TRNA_RS34605 (BL01567)	comGF	2554587..2555075 (-)	489	WP_011201694.1	competence type IV pilus minor pilin ComGF	-
TRNA_RS34610 (BL01568)	comGE	2554984..2555331 (-)	348	WP_009327907.1	competence type IV pilus minor pilin ComGE	-
TRNA_RS34615 (BL01569)	comGD	2555315..2555752 (-)	438	WP_009327905.1	competence type IV pilus minor pilin ComGD	Machinery gene
TRNA_RS34620 (BL01570)	comGC	2555758..2556051 (-)	294	WP_003183466.1	competence type IV pilus major pilin ComGC	Machinery gene
TRNA_RS34625 (BL01571)	comGB	2556065..2557099 (-)	1035	WP_011198115.1	competence type IV pilus assembly protein ComGB	Machinery gene
TRNA_RS34630 (BL01572)	comGA	2557089..2558153 (-)	1065	WP_003183477.1	competence type IV pilus ATPase ComGA	Machinery gene
TRNA_RS34635 (BL01573)	-	2558310..2559149 (-)	840	WP_003183480.1	STAS domain-containing protein	-
TRNA_RS34645 (BL01574)	-	2559391..2559768 (-)	378	WP_003183482.1	Spx/MgsR family RNA polymerase-binding regulatory protein	-
TRNA_RS34650 (BL01554)	-	2559977..2560222 (+)	246	WP_003183483.1	DUF2626 domain-containing protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16249.07 Da
• Isoelectric Point: 9.6739

>NTDB_id=23927 TRNA_RS34615 WP_009327905.1 2555315..2555752(-) (comGD) [Bacillus licheniformis DSM 13 = ATCC 14580]
MNQKGFTLLESLTVLMIGSIMFSLLFALLPPIYEKRIVQHFVSQLEEDLLYAQQTALVRHTTVKVQFDFAGCRYIMKHSD
EGSSPELVRTYSCNIAIKKSTLKPILTFNPSGVPNQGGKIVIDTQHASFILTIYLGSGKINVQKK

Nucleotide

• Length: 438 bp

>NTDB_id=23927 TRNA_RS34615 WP_009327905.1 2555315..2555752(-) (comGD) [Bacillus licheniformis DSM 13 = ATCC 14580]
ATGAATCAAAAAGGATTTACGCTTTTGGAAAGTTTAACTGTATTGATGATCGGTTCTATTATGTTCTCTCTTCTCTTTGC
TCTACTGCCTCCCATTTATGAAAAAAGAATCGTTCAGCACTTTGTCTCACAGCTTGAAGAGGATTTGCTTTACGCTCAGC
AGACGGCTCTCGTCCGCCATACGACGGTTAAGGTGCAGTTTGACTTTGCCGGCTGCCGCTATATCATGAAGCATTCGGAC
GAAGGCTCATCGCCTGAACTGGTCAGGACATACAGCTGCAATATCGCAATCAAAAAGTCGACGCTCAAACCAATTCTTAC
TTTTAATCCAAGCGGTGTTCCGAATCAAGGGGGAAAGATCGTGATCGATACACAGCATGCCTCTTTTATACTGACGATCT
ATTTAGGAAGCGGAAAGATTAATGTTCAAAAAAAATAA

Domains

Predicted by InterProScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (2-25)

3D structure

• AlphaFold DB: Q8VQ70

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Bacillus subtilis subsp. subtilis str. 168	39.86	98.621	0.393