Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   CCX46_RS26075 Genome accession   NZ_CP022411
Coordinates   5715984..5717573 (+) Length   529 a.a.
NCBI ID   WP_127930454.1    Uniprot ID   -
Organism   Pseudomonas sp. RU47     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5710984..5722573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX46_RS26055 (CCX46_25590) pgeF 5712776..5713498 (-) 723 WP_127929825.1 peptidoglycan editing factor PgeF -
  CCX46_RS26060 (CCX46_25595) rluD 5713495..5714457 (-) 963 WP_016986220.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CCX46_RS26065 (CCX46_25600) - 5714609..5715625 (+) 1017 WP_127929826.1 outer membrane protein assembly factor BamD -
  CCX46_RS26070 (CCX46_25605) - 5715752..5715994 (+) 243 WP_127929827.1 PP0621 family protein -
  CCX46_RS26075 (CCX46_25610) pilS 5715984..5717573 (+) 1590 WP_127930454.1 ATP-binding protein Regulator
  CCX46_RS26080 (CCX46_25615) pilR 5717570..5718916 (+) 1347 WP_127929828.1 sigma-54 dependent transcriptional regulator Regulator
  CCX46_RS26085 (CCX46_25620) thiO 5719033..5720133 (-) 1101 WP_127929829.1 glycine oxidase ThiO -
  CCX46_RS26090 (CCX46_25625) - 5720191..5720592 (-) 402 WP_127929830.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58551.00 Da        Isoelectric Point: 6.2730

>NTDB_id=239238 CCX46_RS26075 WP_127930454.1 5715984..5717573(+) (pilS) [Pseudomonas sp. RU47]
MIAEATHADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDELLRGGSWLYLILNILLVVFLENTRRPAQLF
SLALVDVLLLCGVFFAAGGVGSALGNLLIVSVAISNTLLRRRIGLLIAAIGALGIVGSSFLLSFNHPLSANEYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVGLEALNALILQRMRTGILVLDEERRVQLANHSAQTLLAQSHLQGHLID
DYSSALVDRLQLWMNNPTLRPQSLKIPDNGLELQPSFIALEQSPNQQTLVFLEDLAQIAQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLGESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLENFVAESREQAGER
QQIHLRINSGDFTTLMDPNQLTQILDNLLRNGWRHSALLHDQAEVWLALFTDPDSQLAILEVQDNGPGVPADEQTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFQSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=239238 CCX46_RS26075 WP_127930454.1 5715984..5717573(+) (pilS) [Pseudomonas sp. RU47]
GTGATCGCTGAGGCCACCCACGCCGACAGCAAACAGGCTCAGCGCCTGCTGCGCCTTTATCATCTTTACCGTTTAAGCGT
CGGCATCACCCTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGAACTGCTGCGCG
GCGGCAGCTGGCTGTATCTGATCCTCAACATCTTGCTGGTAGTGTTCCTTGAGAACACCCGACGGCCGGCGCAGCTGTTC
AGCCTGGCCCTCGTCGATGTCCTGCTTTTATGCGGTGTGTTCTTTGCGGCAGGCGGTGTTGGCAGTGCGCTGGGCAATTT
GCTGATTGTCTCGGTGGCAATCAGCAACACCTTGCTACGCCGACGCATCGGCCTGTTGATCGCCGCCATCGGCGCGCTGG
GCATCGTCGGTTCGAGTTTCCTGCTGAGCTTCAACCATCCCCTGAGCGCCAATGAATACCTGCAAGCCGGCACCCTTGGC
GCCCTGTGCTTTGCCGCCTCGTTGTTGGTGCAGGGACTGATCCGGCGCCTGGAGGTCAGCGAAACACTGGCCGAACAGCG
CGCCAGTGAAGTGGTCGGGCTCGAAGCGCTCAATGCGCTGATCCTGCAACGCATGCGCACCGGGATTCTGGTCCTCGACG
AGGAGCGCCGGGTGCAACTGGCGAACCACAGCGCACAAACCCTGCTCGCGCAATCTCACCTTCAGGGACATTTGATCGAC
GACTATTCCAGTGCGCTGGTCGATCGCCTGCAACTGTGGATGAACAACCCGACCTTGCGCCCGCAAAGCCTGAAAATCCC
CGACAACGGCCTCGAACTGCAACCGAGCTTCATTGCCCTCGAGCAAAGTCCCAACCAGCAAACCCTGGTGTTTCTCGAAG
ACCTTGCGCAAATCGCCCAGCAGGCCCAGCAATTGAAACTGGCCGCGCTCGGGCGCTTGACCGCCGGGATCTCCCACGAG
ATCCGCAATCCGCTGGGTGCCATCAGTCACGCTGCACAGCTATTGGGGGAGTCCGAGGAACTCGACAGCGCCGATCGGCG
TCTGACGCAGATCATTCAAGATCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGGCGCCAAC
AGAGCGCGCCGCAACGACTGGATCTCAAGCCGTGGCTGGAGAATTTCGTTGCCGAAAGCCGCGAACAGGCGGGCGAGCGC
CAGCAGATTCATCTGCGGATCAATTCAGGGGACTTCACCACGCTGATGGACCCCAACCAGCTCACGCAGATTCTCGACAA
TCTGTTACGCAATGGCTGGCGCCACAGCGCGCTGCTGCATGATCAAGCCGAAGTCTGGCTGGCCCTTTTCACCGATCCCG
ACAGCCAGTTGGCGATCCTCGAAGTGCAGGACAACGGCCCCGGCGTGCCTGCCGATGAACAGACACATCTGTTCGAACCG
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAAGCGCGCCT
AGACTTTCAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.245

100

0.594

Multiple sequence alignment