Detailed information NTG0239239

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: CCX46_RS26080
• Genome accession: NZ_CP022411
• Coordinates: 5717570..5718916 (+)
• Length: 448 a.a.
• NCBI ID: WP_127929828.1
• Uniprot ID: -
• Organism: Pseudomonas sp. RU47
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5712570..5723916

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CCX46_RS26055 (CCX46_25590)	pgeF	5712776..5713498 (-)	723	WP_127929825.1	peptidoglycan editing factor PgeF	-
CCX46_RS26060 (CCX46_25595)	rluD	5713495..5714457 (-)	963	WP_016986220.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
CCX46_RS26065 (CCX46_25600)	-	5714609..5715625 (+)	1017	WP_127929826.1	outer membrane protein assembly factor BamD	-
CCX46_RS26070 (CCX46_25605)	-	5715752..5715994 (+)	243	WP_127929827.1	PP0621 family protein	-
CCX46_RS26075 (CCX46_25610)	pilS	5715984..5717573 (+)	1590	WP_127930454.1	ATP-binding protein	Regulator
CCX46_RS26080 (CCX46_25615)	pilR	5717570..5718916 (+)	1347	WP_127929828.1	sigma-54 dependent transcriptional regulator	Regulator
CCX46_RS26085 (CCX46_25620)	thiO	5719033..5720133 (-)	1101	WP_127929829.1	glycine oxidase ThiO	-
CCX46_RS26090 (CCX46_25625)	-	5720191..5720592 (-)	402	WP_127929830.1	type IV pilin protein	-
CCX46_RS26095 (CCX46_25630)	-	5720608..5723697 (-)	3090	WP_127929831.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50095.33 Da
• Isoelectric Point: 6.5960

>NTDB_id=239239 CCX46_RS26080 WP_127929828.1 5717570..5718916(+) (pilR) [Pseudomonas sp. RU47]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTYSARNLTEAQALLHRETFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGTALRMPAAGGSSTSIDRRLLGDSAPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQESVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEVLA
AHMLKRLAKDTGQPAARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNCAADGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=239239 CCX46_RS26080 WP_127929828.1 5717570..5718916(+) (pilR) [Pseudomonas sp. RU47]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCGGACATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTACAGCGCGCGCAATCTGACTGAAGCCCAGGCGCTGTTGCATCGCGAAACATTCGACCTGT
GCCTGACCGACATGCGTCTGCCCGACGGCACGGGACTGGAACTGGTGCAGCACATTCAGCAGCGTTATCCACAACTGCCA
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACGGCGATCAACGCCTTGAAAGCAGGCGCATTCGACTTTCTTACCAA
ACCAGTGGACCTCACTCGCTTGCGCGAACTGGTCGGCACGGCACTACGCATGCCGGCGGCGGGCGGCAGCTCCACCTCGA
TTGATCGACGCTTGCTCGGCGATTCAGCGCCGATGCGCAACCTGCGCAAACAGATCGACAAACTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGCGAATCCGGCAGCGGTAAAGAACTGGTCGCGCGACTGATCCACGAACAGGGGCCGCGCGCCAG
CCAGCCGTTCGTACCGGTGAACTGCGGGGCGATTCCCTCGGAGCTGATGGAAAGCGAGTTTTTTGGTCATCGCAAAGGCA
GTTTCACCGGCGCAGTCGAGGACAAACCCGGGCTGTTTCAGGCGGCCCATGGCGGCACGTTGTTTCTCGATGAAGTGGCG
GATTTGCCGCTGTCGATGCAGGTGAAGTTACTGCGCGCGATTCAGGAAAAAGCCGTGCGCAGTGTCGGCGGCCAGCAGGA
AAGCGTGGTCGATGTGCGGATTCTTTGCGCCACCCACAAGGATCTCGATGCAGAGGTCGCGGCCGAGCGTTTTCGTCAGG
ACCTTTATTACCGCCTGAACGTGATTGAATTGCGCGTGCCGTCGCTGCGTGAGCGCCGTGATGACATTGAAGTGCTGGCG
GCACATATGCTCAAGCGTTTGGCCAAGGACACCGGCCAACCGGCAGCACGCTTGCATCCGCAGGCGTTGGAAGCGCTGAA
GAACTACCGCTTTCCGGGGAATGTGCGGGAACTGGAGAACGTGCTCGAACGAGCGCACACCCTGTGTGAAAACCGCACGA
TCGAGGCTGAAGATTTACGTTTGAGTGAAGGCAACTGCGCGGCGGATGGTGGGATTGCCGATCTGACCCAGATCGATAAT
CTGGAAGATTATCTGGAGAACGTCGAGCGCAAACTCATCTTGCAGGCGCTGGAGGAGACGCGCTGGAATCGTACGGCGGC
GGCGCAGCGGTTGAGTCTTTCGTTCAGATCGATGCGCTACAGACTGAAGAAATTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.91	98.884	0.79
pilR	Acinetobacter baumannii strain A118	48.802	100	0.5