Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | CGC32_RS00270 | Genome accession | NZ_CP022409 |
| Coordinates | 62684..63259 (+) | Length | 191 a.a. |
| NCBI ID | WP_089482153.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain G272 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 57684..68259
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CGC32_RS00245 (CGC32_00245) | uvrD | 58375..60420 (+) | 2046 | WP_198360899.1 | DNA helicase UvrD | - |
| CGC32_RS00250 (CGC32_00250) | flgA | 60417..61073 (+) | 657 | WP_089482150.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| CGC32_RS00255 (CGC32_00255) | - | 61083..61646 (+) | 564 | WP_089482151.1 | UbiX family flavin prenyltransferase | - |
| CGC32_RS00260 (CGC32_00260) | coaD | 61646..62119 (+) | 474 | WP_001169259.1 | pantetheine-phosphate adenylyltransferase | - |
| CGC32_RS00265 (CGC32_00265) | tmk | 62121..62696 (+) | 576 | WP_089482152.1 | dTMP kinase | - |
| CGC32_RS00270 (CGC32_00270) | comFC | 62684..63259 (+) | 576 | WP_089482153.1 | ComF family protein | Machinery gene |
| CGC32_RS00275 (CGC32_00275) | - | 63292..65331 (+) | 2040 | WP_089482154.1 | class I SAM-dependent DNA methyltransferase | - |
| CGC32_RS08285 | - | 65328..65993 (+) | 666 | WP_332459529.1 | restriction endonuclease subunit S | - |
| CGC32_RS08290 (CGC32_00280) | - | 65962..66567 (+) | 606 | WP_332459530.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21285.94 Da Isoelectric Point: 8.9399
>NTDB_id=239201 CGC32_RS00270 WP_089482153.1 62684..63259(+) (comFC) [Helicobacter pylori strain G272]
MRCLTCLKLSFKPLCKNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYVLIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGCLRATNAVSYAGKSLEFRANNPRNFTFKGDETLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCKNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYVLIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGCLRATNAVSYAGKSLEFRANNPRNFTFKGDETLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=239201 CGC32_RS00270 WP_089482153.1 62684..63259(+) (comFC) [Helicobacter pylori strain G272]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCAAAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
TGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCTATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGATGTTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCACACTTTGCAATCGCTCTTTG
CAGTGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCAAAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
TGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCTATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGATGTTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCACACTTTGCAATCGCTCTTTG
CAGTGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.288 |
100 |
0.953 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |