Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C9J79_RS08385 Genome accession   NZ_CP028185
Coordinates   1603910..1604461 (+) Length   183 a.a.
NCBI ID   WP_002853013.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CFSAN054107     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1598910..1609461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J79_RS08350 (C9J79_08345) - 1599210..1599635 (+) 426 WP_002859154.1 GNAT family N-acetyltransferase -
  C9J79_RS08355 (C9J79_08350) - 1599699..1600320 (+) 622 Protein_1620 NAD(P)H-dependent oxidoreductase -
  C9J79_RS08360 (C9J79_08355) - 1600320..1600814 (+) 495 WP_107131197.1 NAD(P)H-dependent oxidoreductase -
  C9J79_RS08365 (C9J79_08360) pgsA 1600939..1601475 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C9J79_RS08370 (C9J79_08365) rseP 1601472..1602578 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  C9J79_RS08375 (C9J79_08370) - 1602571..1603437 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  C9J79_RS08380 (C9J79_08375) rpsF 1603524..1603901 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  C9J79_RS08385 (C9J79_08380) ssb 1603910..1604461 (+) 552 WP_002853013.1 single-stranded DNA-binding protein Machinery gene
  C9J79_RS08390 (C9J79_08385) rpsR 1604472..1604732 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  C9J79_RS08395 (C9J79_08390) lon 1604792..1607167 (-) 2376 WP_002853487.1 endopeptidase La -
  C9J79_RS08400 (C9J79_08395) - 1607184..1607831 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  C9J79_RS08405 (C9J79_08400) fliW 1607992..1608381 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  C9J79_RS08410 (C9J79_08405) proC 1608381..1609112 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  C9J79_RS08415 (C9J79_08410) ctsT 1609109..1609411 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20710.60 Da        Isoelectric Point: 5.0431

>NTDB_id=239061 C9J79_RS08385 WP_002853013.1 1603910..1604461(+) (ssb) [Campylobacter jejuni strain CFSAN054107]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=239061 C9J79_RS08385 WP_002853013.1 1603910..1604461(+) (ssb) [Campylobacter jejuni strain CFSAN054107]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361