Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   CEQ48_RS15925 Genome accession   NZ_CP022353
Coordinates   2245714..2246325 (+) Length   203 a.a.
NCBI ID   WP_089071916.1    Uniprot ID   A0AAU8WJS5
Organism   Vibrio tarriae strain 2521-89     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2240714..2251325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ48_RS15905 (CEQ48_15905) - 2241036..2241953 (-) 918 WP_000271068.1 ABC transporter ATP-binding protein -
  CEQ48_RS15910 (CEQ48_15910) - 2242334..2243980 (-) 1647 WP_089071914.1 SulP family inorganic anion transporter -
  CEQ48_RS15915 (CEQ48_15915) can 2244128..2244796 (+) 669 WP_089071915.1 carbonate dehydratase -
  CEQ48_RS15920 (CEQ48_15920) hpt 2244885..2245418 (-) 534 WP_000683351.1 hypoxanthine phosphoribosyltransferase -
  CEQ48_RS15925 (CEQ48_15925) hapR 2245714..2246325 (+) 612 WP_089071916.1 quorum-sensing master transcriptional regulator HapR Regulator
  CEQ48_RS15935 (CEQ48_15935) rsmI 2246551..2247417 (-) 867 WP_089071918.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  CEQ48_RS15940 (CEQ48_15940) - 2247487..2249292 (+) 1806 WP_089071919.1 penicillin-binding protein activator -
  CEQ48_RS15945 (CEQ48_15945) - 2249279..2249647 (+) 369 WP_001893625.1 YraN family protein -
  CEQ48_RS15950 (CEQ48_15950) - 2249651..2250241 (+) 591 WP_000887295.1 phosphoheptose isomerase -
  CEQ48_RS15955 (CEQ48_15955) - 2250244..2250813 (+) 570 WP_000836325.1 BON domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23676.33 Da        Isoelectric Point: 6.6397

>NTDB_id=238640 CEQ48_RS15925 WP_089071916.1 2245714..2246325(+) (hapR) [Vibrio tarriae strain 2521-89]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFL
TDHIDLDLDVKSNLQTLSKEMVKLAMTDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVRNMFMKAMERGELCEKHDV
DNMASLFHGIFYSIFLQVNRLGEQEAVYKLVDSYLNMLCIYKN

Nucleotide


Download         Length: 612 bp        

>NTDB_id=238640 CEQ48_RS15925 WP_089071916.1 2245714..2246325(+) (hapR) [Vibrio tarriae strain 2521-89]
ATGGACGCATCAATCGAAAAACGCCCTCGAACTCGGCTATCGCCTCAAAAACGCAAACTACAACTGATGGAAATCGCGTT
GGAAGTGTTTGCTAAACGTGGCATTGGTCGAGGTGGTCATGCTGATATTGCAGAGATTGCGCAAGTTTCTGTCGCAACCG
TGTTCAACTACTTCCCTACTCGTGAAGACTTGGTCGACGATGTGCTGAATTTTGTGGTTCGTCAGTACTCCAATTTCTTG
ACCGATCACATCGATCTTGATTTGGATGTGAAAAGCAACCTGCAAACCCTGAGCAAGGAGATGGTGAAATTAGCGATGAC
CGATTGTCACTGGCTCAAAGTCTGGTTTGAGTGGAGCGCTTCAACCCGTGACGAAGTTTGGCCACTGTTTGTTTCCACCA
ACCGCACGAACCAACTGCTGGTCAGAAACATGTTTATGAAAGCGATGGAGCGTGGCGAATTGTGTGAGAAACACGATGTC
GACAACATGGCAAGCCTATTCCACGGCATCTTTTATTCCATCTTCTTACAAGTGAACCGTTTAGGTGAGCAAGAAGCGGT
GTACAAGCTGGTCGATAGCTACCTCAACATGCTGTGTATCTATAAGAACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

98.03

100

0.98
  hapR Vibrio cholerae strain A1552

98.03

100

0.98
  opaR Vibrio parahaemolyticus RIMD 2210633

73.232

97.537

0.714

Multiple sequence alignment