Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   CEQ48_RS13810 Genome accession   NZ_CP022353
Coordinates   1774529..1775896 (-) Length   455 a.a.
NCBI ID   WP_089072383.1    Uniprot ID   A0AAU8WKX7
Organism   Vibrio tarriae strain 2521-89     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1769529..1780896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ48_RS13770 (CEQ48_13770) - 1769661..1770236 (+) 576 Protein_1583 GGDEF domain-containing protein -
  CEQ48_RS13775 (CEQ48_13775) moaE 1770251..1770703 (-) 453 WP_089071638.1 molybdopterin synthase catalytic subunit MoaE -
  CEQ48_RS13780 (CEQ48_13780) moaD 1770705..1770950 (-) 246 WP_000598590.1 molybdopterin synthase sulfur carrier subunit -
  CEQ48_RS13785 (CEQ48_13785) moaC 1770947..1771426 (-) 480 WP_198301159.1 cyclic pyranopterin monophosphate synthase MoaC -
  CEQ48_RS13790 (CEQ48_13790) moaB 1771437..1771949 (-) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  CEQ48_RS13795 (CEQ48_13795) moaA 1772009..1772998 (-) 990 WP_089072382.1 GTP 3',8-cyclase MoaA -
  CEQ48_RS13800 (CEQ48_13800) - 1773305..1774195 (+) 891 WP_000061070.1 YvcK family protein -
  CEQ48_RS13805 (CEQ48_13805) luxU 1774184..1774525 (-) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  CEQ48_RS13810 (CEQ48_13810) luxO 1774529..1775896 (-) 1368 WP_089072383.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  CEQ48_RS13820 (CEQ48_13820) uvrB 1776327..1778357 (-) 2031 WP_089071640.1 excinuclease ABC subunit UvrB -
  CEQ48_RS13830 (CEQ48_13830) rsxA 1779239..1779820 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  CEQ48_RS13835 (CEQ48_13835) rsxB 1779820..1780407 (+) 588 WP_000104488.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50895.23 Da        Isoelectric Point: 5.5755

>NTDB_id=238636 CEQ48_RS13810 WP_089072383.1 1774529..1775896(-) (luxO) [Vibrio tarriae strain 2521-89]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKVSKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSVEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=238636 CEQ48_RS13810 WP_089072383.1 1774529..1775896(-) (luxO) [Vibrio tarriae strain 2521-89]
ATGGTAGAAGACACGGCGTCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGTCGTCGCGAGCCGGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCTCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
AGTGAATAATGCGATTCGCAAAGTCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACCGGTAAAGAAGTGTGCGCGGAAGCGATTCATGCCGCGAGCAAGCGTGGAGATAAGCCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTCAAAGGGGCTTTTACTGGGGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTTCTGCGCTTTATTCAGACAGGGACATTCCAAAAAGTTGGATCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCAACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGGCGTTTTCGTGAAGACCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGTGCGCGCGGTGATGATGTGATCGAGATTGCTTATTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGTTGAAGTGGTGGAGCGTTTTCGTCAATACGAGTGGCCGGG
CAATGTGCGTCAATTGCAAAACGTTCTGCGCAACGTGGTCGTGCTCAATGAAGGTCGTGAAATCACCCTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCATTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTGTGGATGACCGAAAAACAAGCCATTGAACAAGCCATCGAAGCGTGTGATGGTAACATTCCCCGTGCCGC
AACCTATCTGGATGTCAGCCCGTCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

99.56

100

0.996
  pilR Pseudomonas aeruginosa PAK

38.274

99.341

0.38

Multiple sequence alignment