Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   CEQ48_RS08565 Genome accession   NZ_CP022353
Coordinates   636259..639603 (+) Length   1114 a.a.
NCBI ID   WP_198301243.1    Uniprot ID   -
Organism   Vibrio tarriae strain 2521-89     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 631259..644603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ48_RS08540 (CEQ48_08540) sucC 631381..632547 (+) 1167 WP_001048578.1 ADP-forming succinate--CoA ligase subunit beta -
  CEQ48_RS08545 (CEQ48_08545) sucD 632547..633419 (+) 873 WP_000025475.1 succinate--CoA ligase subunit alpha -
  CEQ48_RS08550 (CEQ48_08550) znuB 633526..634308 (-) 783 WP_089072362.1 zinc ABC transporter permease subunit ZnuB -
  CEQ48_RS08555 (CEQ48_08555) znuC 634301..635089 (-) 789 WP_089070937.1 zinc ABC transporter ATP-binding protein ZnuC -
  CEQ48_RS08560 (CEQ48_08560) znuA 635173..636057 (+) 885 WP_198301242.1 zinc ABC transporter substrate-binding protein ZnuA -
  CEQ48_RS08565 (CEQ48_08565) tfoS 636259..639603 (+) 3345 WP_198301243.1 AraC family transcriptional regulator Regulator
  CEQ48_RS08570 (CEQ48_08570) - 640368..640598 (+) 231 WP_089070939.1 ferrous iron transport protein A -
  CEQ48_RS08575 (CEQ48_08575) feoB 640595..642872 (+) 2278 Protein_588 Fe(2+) transporter permease subunit FeoB -
  CEQ48_RS08580 (CEQ48_08580) - 642869..643099 (+) 231 WP_000602537.1 FeoC-like transcriptional regulator -
  CEQ48_RS08585 (CEQ48_08585) - 643358..643786 (-) 429 WP_069503635.1 HIT domain-containing protein -

Sequence

Protein


Download         Length: 1114 a.a.        Molecular weight: 126755.41 Da        Isoelectric Point: 6.7216

>NTDB_id=238625 CEQ48_RS08565 WP_198301243.1 636259..639603(+) (tfoS) [Vibrio tarriae strain 2521-89]
MFRTFLYGCLLNIMIPSLVLALDKSMSIFYPLPIQEQGKVIVAQNLYLGSDGGIWVHDVHGKVMYFDGQNVLPRRGSVLP
QMSSHIVYANSAFWAFEQHELFRTYPGGEKELMLSLTPGTQIVQMGASNGMIWMVDGENFYSYEIRSGRVESLSLHELYQ
LNSASKVVINDAQFLVSKWALATNVGVYLSDVQGFSHVKKSGKHFVQKLYFSHKRRELLIGSKRGALIIDIENKRALPDR
IGSSHVLSIAETEKEYWIGTEDGLFVYSFITGKVVQLESNSQDGYALLGKKIYAMVNDFQGGMWIGTDKGIFYYSLFGQQ
FTRYPAQALSNDGSKTPIGKITSLNSSGDYLAITQQGLYSFNFSDELRKNLIYPGKVNDFVIEQEHIWIATEKGLVRYNL
NRRGIDTPNLPLMLLQTAIEHLSLDSDGNLWGASNHQIWSYSLSEQTYRDYGSEWMVKAFSPSRITLIAAVTKGVVIGTE
HGAYSLFEQQIRFDFSSHRYGEILQVVEDSAGHIWVVGSYGVFQWRKDQPEAAAVELIEENIQPLCITESQQGMWLISTQ
GISYYRNQELTKHFGAPYGLINNEFLSGSCAVGEVQEISSLIIGSQFGVVKTNTEELAVSNLPNIQVTFSQVSVNHATKL
LGYRMPEPLKIAYGDSISFQFGALPSSRSQSLEYKLNDEQQWQRFDWALLNFDQLLPGKYRLKVRSANPTQRYRTEALFD
FEVLQPWYMNPVAIIGYVLSLLGLLALAFWWRTRMILSANRKLKAQVDLKTSQLRHQSKIVLSNNHQLRKQLQLHHTILG
NVLENIDASLRHLSSYAKVRAWSEFEAPFNKVKQELAQLHFMHRGDDEESKYHDLHLLIESALKSWQEEYNRAQIKLTYS
GESRFVEVRQFNLDVLFNAVLTDAIKRLYKHQELTIQLEMRNAQAVIVFSDFGVPIQNINQMMVTLSGNSYPLEELATRS
GGELHVLALKERNVIELAWPLVSLPELEPIHKQEEGELAVKVGIDDVEKEWLSKVEKLIELHYSDPNFTTSTAAQLLYVS
ERSLQRRFKAVTGKTFKESLNEVRLEKACQSLLSGTKIAQVAFDCGFNDPSYFSQRFKHHFGLSPSQFIEDQEN

Nucleotide


Download         Length: 3345 bp        

>NTDB_id=238625 CEQ48_RS08565 WP_198301243.1 636259..639603(+) (tfoS) [Vibrio tarriae strain 2521-89]
GTGTTTCGCACATTTTTGTATGGCTGCTTGCTCAATATCATGATCCCATCCTTGGTATTGGCGTTAGATAAATCCATGTC
CATTTTCTATCCTCTGCCCATTCAAGAGCAGGGGAAGGTCATTGTTGCGCAAAACCTCTACCTCGGCAGTGATGGTGGTA
TCTGGGTGCATGATGTTCATGGCAAAGTGATGTACTTTGATGGGCAGAATGTATTACCTCGACGTGGTTCAGTTTTGCCA
CAAATGTCTAGTCATATTGTTTATGCCAACAGTGCATTCTGGGCTTTCGAACAACATGAGTTATTCAGAACCTATCCGGG
AGGGGAAAAAGAGCTGATGTTGAGCTTAACTCCGGGAACGCAAATTGTTCAGATGGGAGCCTCAAACGGCATGATCTGGA
TGGTCGATGGGGAAAACTTTTATAGTTATGAGATCCGAAGTGGACGCGTCGAGTCCCTCTCTTTACATGAACTTTATCAG
CTCAATAGTGCCAGCAAGGTCGTGATTAACGATGCGCAGTTTTTAGTATCGAAATGGGCTTTAGCGACCAATGTCGGTGT
GTATTTGTCAGACGTTCAAGGTTTCTCCCATGTAAAAAAATCGGGTAAACACTTCGTCCAGAAACTCTATTTTTCTCATA
AACGTCGTGAGTTGTTGATAGGCTCTAAACGTGGTGCGTTAATTATCGATATCGAAAATAAGCGTGCATTGCCTGATAGA
ATTGGTTCCTCTCATGTATTGTCGATCGCTGAAACAGAGAAAGAGTACTGGATTGGCACCGAAGATGGCCTTTTTGTTTA
TTCTTTCATCACAGGAAAAGTGGTTCAGCTTGAGAGTAACAGTCAAGATGGCTATGCCTTATTGGGTAAGAAAATCTACG
CCATGGTCAATGACTTCCAAGGTGGAATGTGGATAGGAACCGATAAGGGGATTTTTTACTATTCCCTGTTTGGTCAGCAG
TTCACTCGGTATCCAGCACAAGCTCTATCTAATGACGGAAGTAAAACGCCGATAGGTAAGATTACGTCTCTCAACTCTAG
CGGAGACTATTTGGCTATAACCCAGCAAGGGTTGTATAGCTTCAACTTTTCTGATGAGTTGCGTAAAAACCTTATTTATC
CAGGTAAGGTGAATGATTTTGTGATTGAGCAAGAACATATTTGGATAGCGACAGAAAAAGGCTTGGTTCGTTACAATTTG
AATCGCCGTGGTATTGATACACCTAATCTGCCACTAATGCTACTACAAACTGCTATTGAGCATCTCAGTTTAGATAGTGA
TGGCAACCTGTGGGGAGCAAGCAACCACCAAATCTGGTCATATTCACTTTCTGAACAAACCTATCGAGATTATGGTTCTG
AATGGATGGTGAAAGCGTTTTCACCATCACGGATCACTCTGATCGCAGCGGTGACAAAAGGCGTTGTCATAGGTACTGAA
CATGGCGCTTATTCACTCTTTGAACAGCAGATCCGCTTTGATTTTTCGAGCCATCGTTATGGTGAGATTCTACAAGTTGT
TGAAGATTCAGCGGGCCATATTTGGGTCGTTGGCTCTTATGGGGTCTTTCAGTGGCGCAAAGACCAACCAGAAGCCGCAG
CAGTAGAGTTAATCGAAGAGAATATTCAACCTTTGTGTATTACGGAATCCCAACAAGGTATGTGGCTTATTTCCACACAA
GGGATCAGTTACTACCGCAACCAAGAGCTTACTAAACATTTTGGAGCCCCTTATGGTTTGATTAATAATGAGTTTTTATC
GGGATCTTGTGCGGTAGGTGAGGTACAAGAGATCTCTTCGCTGATCATCGGGTCTCAGTTTGGTGTGGTGAAAACAAATA
CAGAAGAATTAGCAGTATCTAATTTGCCCAATATTCAGGTGACATTTAGTCAAGTCAGTGTGAATCATGCGACTAAGCTT
TTGGGATATCGTATGCCAGAACCACTGAAAATTGCTTATGGCGATTCGATCAGTTTCCAGTTTGGGGCTTTGCCTTCTTC
ACGTAGTCAGTCTTTAGAGTACAAACTCAACGATGAACAGCAGTGGCAGCGTTTTGATTGGGCTCTACTCAATTTTGACC
AACTGTTACCAGGCAAATACCGTTTGAAAGTTCGTAGCGCGAATCCGACACAACGATACCGAACCGAAGCCCTATTTGAT
TTTGAAGTTTTACAACCTTGGTATATGAATCCTGTTGCTATTATCGGATATGTGCTTAGTTTGCTGGGCTTGTTAGCACT
CGCTTTTTGGTGGCGAACTCGAATGATATTGAGCGCTAATCGTAAGCTAAAAGCGCAAGTTGACCTCAAAACGAGCCAGT
TACGTCATCAAAGTAAAATTGTGCTGAGTAATAACCATCAACTTCGAAAACAATTGCAGCTCCACCATACGATTCTTGGC
AACGTTTTAGAAAATATTGATGCATCACTACGGCATTTGTCTTCTTATGCGAAAGTTCGAGCGTGGAGTGAATTTGAAGC
ACCTTTCAATAAAGTTAAGCAAGAACTAGCTCAACTGCATTTTATGCATCGTGGAGATGACGAAGAAAGTAAATATCATG
ATTTGCATCTTTTGATTGAGTCAGCGTTAAAAAGCTGGCAAGAAGAGTACAACAGAGCGCAGATTAAACTGACTTATAGT
GGTGAATCTCGTTTTGTTGAAGTGCGGCAATTCAATCTTGATGTGTTATTTAATGCCGTGCTAACGGATGCGATCAAAAG
ACTATACAAACATCAAGAATTAACCATACAACTTGAAATGAGAAATGCGCAGGCTGTCATCGTGTTTTCTGATTTTGGTG
TGCCTATCCAAAACATAAACCAAATGATGGTGACCTTATCAGGAAATAGTTATCCGCTTGAAGAATTGGCCACTCGCAGT
GGTGGTGAATTGCATGTTTTAGCATTGAAAGAACGTAATGTTATTGAACTAGCTTGGCCATTGGTTAGCTTACCGGAATT
GGAACCTATCCATAAACAAGAAGAAGGTGAGCTGGCGGTTAAGGTTGGGATTGATGATGTGGAGAAAGAATGGCTCAGTA
AAGTCGAGAAACTGATTGAGCTGCATTACAGCGATCCCAATTTCACCACATCTACGGCCGCGCAGTTGTTGTATGTCTCT
GAACGCAGTTTACAGCGTCGCTTTAAAGCAGTAACAGGGAAAACTTTCAAAGAATCTTTGAATGAAGTTCGATTAGAAAA
AGCGTGTCAAAGTTTATTGAGTGGGACGAAAATCGCGCAGGTCGCCTTTGATTGCGGATTTAATGACCCCTCCTATTTCA
GCCAGCGTTTCAAACATCATTTTGGATTATCGCCAAGTCAGTTCATCGAAGACCAAGAAAACTAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_18)

(1034-1109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

92.011

100

0.92

Multiple sequence alignment