Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   CEQ48_RS05250 Genome accession   NZ_CP022352
Coordinates   1059040..1060209 (-) Length   389 a.a.
NCBI ID   WP_089070508.1    Uniprot ID   A0AAU8WBI6
Organism   Vibrio tarriae strain 2521-89     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1054040..1065209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ48_RS05245 (CEQ48_05245) cqsS 1056931..1058991 (+) 2061 WP_089070507.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  CEQ48_RS05250 (CEQ48_05250) cqsA 1059040..1060209 (-) 1170 WP_089070508.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  CEQ48_RS05255 (CEQ48_05255) - 1060406..1061368 (-) 963 WP_089070509.1 TDT family transporter -
  CEQ48_RS05260 (CEQ48_05260) clcA 1061515..1062921 (-) 1407 WP_089070510.1 H(+)/Cl(-) exchange transporter ClcA -
  CEQ48_RS05265 (CEQ48_05265) - 1063388..1064376 (+) 989 Protein_970 GTP-binding protein -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43582.69 Da        Isoelectric Point: 6.4943

>NTDB_id=238613 CEQ48_RS05250 WP_089070508.1 1059040..1060209(-) (cqsA) [Vibrio tarriae strain 2521-89]
MNKPQLPDFIQDKINHYIENYFDINKNGKHLVLGKQASSDDIILQSNDYLALANHPLIKARLAKSLLEDQQSLFMSASFL
QNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRM
LIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLSELGLTREVHFMTASLAKTFAY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMAKKLRIGLTQLGLTIRSESQIIGL
ETGDERNTEKVRDYLESNGLFGSVFCRPATSKNKNIIRLSLNSDVNDEQITKIIEVCSNAIKCGDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=238613 CEQ48_RS05250 WP_089070508.1 1059040..1060209(-) (cqsA) [Vibrio tarriae strain 2521-89]
ATGAATAAACCACAACTTCCTGATTTTATTCAGGATAAGATAAATCACTATATTGAAAATTATTTCGATATAAACAAAAA
CGGTAAACATCTAGTATTAGGCAAACAAGCCAGCTCAGATGACATTATTTTGCAAAGTAATGACTATTTGGCGCTAGCAA
ATCATCCATTGATTAAAGCTCGCTTAGCTAAATCATTACTGGAAGATCAACAAAGTTTATTTATGTCAGCCTCATTTCTA
CAAAATGACTATGACAAACCCATGATTGAGAAACGTTTGGCCAAGTTCACTGGCTTTGATGAATGCCTATTATCTCAATC
TGGTTGGAACGCAAACGTCGGTTTGTTACAAACCATCTGCCAGCCCAATACCAATGTTTACATTGATTTTTTCGCGCACA
TGTCGTTATGGGAAGGGGCACGCTACGCCAATGCTCAGGCGCATCCTTTTATGCATAATAACTGTGACCATTTACGTATG
CTGATTCAACGTCATGGTCCTGGGATCATTGTCGTAGACTCGATTTACAGCACTTTAGGTACGATTGCACCGCTAGCGGA
ACTAGTCAATATCAGCAAAGAGTTTGGCTGCGCCTTATTAGTCGATGAATCCCACTCTTTGGGCACACATGGCCCTAATG
GTGCAGGTTTATTGTCAGAATTAGGCCTCACTCGTGAAGTGCATTTTATGACCGCAAGTTTGGCCAAAACCTTTGCTTAT
CGCGCAGGAGCCATTTGGTGTAACAATGAAGTGAATCGTTGCGTTCCTTTCATTAGTTATCCGGCTATTTTTAGCTCTAC
TTTGCTACCTTATGAAGCGGCAGGATTGGAAACTACATTAGAAATTATTGAGTCTGCGGACAATCGACGTCAGCATTTAG
ATCGTATGGCGAAAAAATTGCGTATCGGATTAACCCAACTGGGATTAACCATTCGTAGTGAAAGCCAAATTATTGGTTTA
GAAACGGGAGATGAACGGAATACCGAAAAAGTACGTGATTATTTAGAAAGTAATGGATTGTTTGGCTCAGTATTCTGTCG
CCCTGCGACTTCAAAGAATAAAAATATTATTCGTTTATCACTCAATAGTGATGTGAATGATGAGCAAATCACCAAAATAA
TTGAGGTTTGCTCCAATGCGATCAAATGTGGTGATTTTTATTTTCGATAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(41-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

96.658

100

0.967

Multiple sequence alignment