Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   LL14B4_RS08525 Genome accession   NZ_CP028160
Coordinates   1736836..1738812 (-) Length   658 a.a.
NCBI ID   WP_109991093.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain 14B4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1731836..1743812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL14B4_RS08500 (LL14B4_08490) dapA 1732382..1733275 (-) 894 WP_109991091.1 4-hydroxy-tetrahydrodipicolinate synthase -
  LL14B4_RS08505 (LL14B4_08495) - 1733616..1734071 (-) 456 WP_003129415.1 NUDIX hydrolase -
  LL14B4_RS08510 (LL14B4_08500) - 1734082..1735158 (-) 1077 WP_109991092.1 aspartate-semialdehyde dehydrogenase -
  LL14B4_RS08515 (LL14B4_08505) - 1735253..1736116 (-) 864 WP_003129417.1 MIP/aquaporin family protein -
  LL14B4_RS08525 (LL14B4_08515) recP/tkt 1736836..1738812 (-) 1977 WP_109991093.1 transketolase Machinery gene
  LL14B4_RS08530 (LL14B4_08520) - 1738993..1740378 (-) 1386 WP_058203067.1 PTS ascorbate transporter subunit IIC -
  LL14B4_RS08535 (LL14B4_08525) - 1740439..1740738 (-) 300 WP_012898229.1 PTS sugar transporter subunit IIB -
  LL14B4_RS08540 (LL14B4_08530) - 1740740..1742680 (-) 1941 WP_033898664.1 BglG family transcription antiterminator -
  LL14B4_RS08545 (LL14B4_08535) - 1742854..1743495 (-) 642 WP_017864827.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 71727.88 Da        Isoelectric Point: 4.8387

>NTDB_id=238612 LL14B4_RS08525 WP_109991093.1 1736836..1738812(-) (recP/tkt) [Lactococcus lactis subsp. lactis strain 14B4]
MFDTTDQLAVNTIRTLSLDAIQKANSGHPGLPMGSAPMAYVLWSKFLNVNPKTSRKWSNRDRFVLSAGHGSAMLYSLLHL
AGYNVTTDDLKGFRQWQSKTPGHPEVNHTDGVEATTGPLGQGIANAVGMAMAEAHLAAQYNKPGFDIVDHYTYALNGDGD
LMEGVSQEAASLAGKLKLGKLILFYDSNNISLDGDLSMSFIDDIQKRFESYGWQHLLVKDGNDLEEIAAAVEVAKAEKSK
PTIIEVKTVIGFGAEKQGTSAVHGAPLGAEGVAFAKKAYGWDYPEFTVPEEVSKRFLETTVARGEAMEQVWRSTFDDYSE
KYPELAEQYAKSFENETPELTLTKHEMETSKASRVTSQEAIQELSAQMPNLWGGSADLSASNNTMVKVEEDFMPDNYAGR
NIWFGVREFAMGAIMNGIALHGGTRVYGGTFFVFSNYMLPSVRMAALQSLPVTYVWTHDSIAVGEDGPTHEPVEQLASVR
SIPNLDVIRPADGNEVVAAWRRAASSKSRPTALILTRQNLPVLPDTYELAEEGLNRGAYILSKEEGKLEGIIIATGSEVA
LALEAKKTLGSGIRVVSMPSMNIFDEQDSAYREEILPKVVRRRLAIEAGTSYGWGKYVGLDGATVTVDTWGASAPANIVL
PAYGFTAENVVKAYKELD

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=238612 LL14B4_RS08525 WP_109991093.1 1736836..1738812(-) (recP/tkt) [Lactococcus lactis subsp. lactis strain 14B4]
ATGTTTGATACTACTGATCAATTGGCTGTAAATACGATTCGTACTCTATCATTAGATGCGATTCAAAAAGCAAATTCAGG
ACATCCTGGACTTCCAATGGGCTCTGCACCAATGGCTTATGTACTTTGGAGCAAATTTCTTAATGTGAACCCTAAGACAA
GTCGTAAATGGTCAAATCGTGACCGTTTTGTCTTGTCTGCTGGTCATGGTTCTGCAATGTTATATAGTTTATTACATTTG
GCAGGTTATAATGTAACGACTGATGATTTAAAAGGTTTCCGTCAATGGCAATCAAAAACACCGGGACATCCAGAAGTTAA
TCATACAGATGGTGTTGAAGCAACAACAGGTCCTTTAGGACAAGGAATTGCCAATGCTGTCGGAATGGCAATGGCTGAAG
CACATTTAGCAGCACAATACAATAAACCTGGTTTTGATATTGTTGACCATTACACTTACGCCTTAAATGGTGATGGTGAT
TTGATGGAAGGTGTTTCACAAGAAGCAGCTTCACTTGCAGGTAAATTGAAACTTGGTAAATTGATTCTTTTCTATGATTC
AAATAATATTTCTCTAGATGGTGACTTATCTATGTCATTTATTGATGATATTCAAAAACGTTTTGAATCATATGGCTGGC
AACATTTATTGGTAAAAGATGGAAATGATTTAGAAGAAATCGCAGCAGCTGTTGAAGTGGCTAAAGCTGAAAAATCTAAA
CCAACAATCATTGAAGTTAAAACAGTCATTGGTTTTGGTGCTGAAAAACAAGGAACTTCAGCAGTTCACGGAGCTCCTCT
TGGAGCTGAAGGTGTTGCATTTGCCAAGAAAGCATATGGTTGGGATTATCCTGAATTTACAGTTCCTGAAGAAGTATCAA
AACGCTTTTTAGAAACGACAGTTGCGCGTGGTGAAGCGATGGAGCAAGTATGGCGCAGTACTTTTGATGATTATTCTGAA
AAATACCCTGAGCTTGCTGAGCAATACGCAAAATCTTTTGAAAATGAAACGCCAGAGCTTACTTTGACCAAGCATGAAAT
GGAAACAAGCAAGGCCAGCCGTGTAACTTCACAAGAAGCTATCCAAGAATTATCAGCTCAAATGCCAAATCTTTGGGGCG
GGTCTGCTGACCTTTCGGCTTCAAATAATACAATGGTTAAAGTTGAAGAAGACTTCATGCCAGATAACTATGCTGGACGT
AATATTTGGTTTGGTGTACGTGAATTTGCGATGGGAGCTATTATGAATGGAATTGCTTTGCATGGTGGAACTCGTGTCTA
TGGCGGAACATTCTTCGTCTTCTCAAACTACATGCTTCCTTCTGTTCGGATGGCTGCTCTACAAAGCTTGCCAGTCACTT
ATGTTTGGACACATGATTCCATTGCTGTTGGGGAAGATGGTCCAACTCACGAACCTGTTGAACAATTAGCTTCTGTTCGC
TCAATTCCTAATTTGGATGTAATTCGTCCAGCTGATGGAAATGAAGTAGTGGCTGCATGGCGTCGTGCTGCATCAAGTAA
AAGCCGCCCAACCGCACTTATTTTGACTCGTCAAAATCTTCCAGTTTTACCTGATACTTACGAATTAGCTGAAGAAGGTC
TGAATCGTGGGGCTTATATTCTTTCAAAAGAAGAAGGAAAACTTGAAGGAATCATCATTGCGACTGGTTCAGAAGTAGCA
TTGGCTCTTGAAGCCAAGAAGACTTTGGGTTCTGGCATTCGTGTCGTTTCAATGCCTTCAATGAATATTTTTGATGAACA
AGACTCAGCTTATCGCGAAGAAATTTTACCAAAAGTTGTAAGACGTCGTTTAGCGATTGAAGCTGGTACAAGTTACGGAT
GGGGTAAATATGTTGGACTTGATGGTGCAACAGTTACAGTAGATACTTGGGGCGCTTCGGCACCAGCAAATATCGTTCTT
CCAGCTTACGGATTTACTGCTGAAAATGTAGTTAAAGCATACAAAGAGCTTGACTAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-338)

Transketolase, C-terminal domain (Transketolase_C)

(551-650)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

55.255

100

0.559

Multiple sequence alignment