Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   CEQ48_RS05245 Genome accession   NZ_CP022352
Coordinates   1056931..1058991 (+) Length   686 a.a.
NCBI ID   WP_089070507.1    Uniprot ID   A0AAU8WBE1
Organism   Vibrio tarriae strain 2521-89     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1051931..1063991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ48_RS05235 (CEQ48_05235) - 1052651..1053790 (+) 1140 WP_089070505.1 exonuclease SbcCD subunit D -
  CEQ48_RS05240 (CEQ48_05240) - 1053792..1056833 (+) 3042 WP_089070506.1 SbcC/MukB-like Walker B domain-containing protein -
  CEQ48_RS05245 (CEQ48_05245) cqsS 1056931..1058991 (+) 2061 WP_089070507.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  CEQ48_RS05250 (CEQ48_05250) cqsA 1059040..1060209 (-) 1170 WP_089070508.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  CEQ48_RS05255 (CEQ48_05255) - 1060406..1061368 (-) 963 WP_089070509.1 TDT family transporter -
  CEQ48_RS05260 (CEQ48_05260) clcA 1061515..1062921 (-) 1407 WP_089070510.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78509.54 Da        Isoelectric Point: 5.9144

>NTDB_id=238612 CEQ48_RS05245 WP_089070507.1 1056931..1058991(+) (cqsS) [Vibrio tarriae strain 2521-89]
MIVSMDVIKRVYQYAEPNLSLVGWMGMLGFPAYYFVWEYWFPQPYENLGLRCAAAVLFAGLVFRDSLPKKWQRYMPDYFL
FTIGFCLPFFFCFMMLMNDWSTIWAMSFMASIFLHILLVHDTRVMALQALFSVLMAYLAVYGLTDFRPTTLIEWQYVPIF
LFTYVFGNLCFFRNQISHETKVSIAKTFGAGIAHEMRNPLSALKTSIDVVRTMIPKPQVAAHADYSLDAQELDLLHQILN
EADDVIYSGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQHSVQLAVHQPFEFFGSDTLLTYALFN
LLKNAFYYQKEHLSVRIEIGQTREHNFIRVRDNGVGIAPEMLEDIFRDFYTFGKNGSYGLGLPFCRKVMTAFGGAIRCAS
QQGQWTEFILTFPRYDSDTVDEIKTELLKTKSLIYIGSNQTIVRELNQLAVEDEFGFTAISAQQAVRRQDYEFEFDLILL
DLDDATTQGEILPKLEGTLSFTQGCIGYVYDPGKTYAVNINRYLRIQPISINSILRKPRKIIERLLFEQESLAMNRNVIP
LKKSRHERRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMNSQNIDLVLMDIEMPNVGGLEATRLIRGSEHDY
KNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVASWV

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=238612 CEQ48_RS05245 WP_089070507.1 1056931..1058991(+) (cqsS) [Vibrio tarriae strain 2521-89]
GTGATAGTGAGCATGGATGTAATAAAGAGAGTGTATCAATACGCAGAACCCAATCTGTCCTTAGTTGGATGGATGGGCAT
GCTCGGCTTTCCTGCCTACTACTTCGTCTGGGAATATTGGTTTCCGCAACCTTACGAAAATTTAGGGTTGCGCTGTGCGG
CGGCGGTGCTATTCGCTGGACTGGTGTTTCGTGATTCGCTGCCTAAAAAGTGGCAACGGTACATGCCGGATTACTTTTTA
TTCACCATAGGTTTCTGCTTACCTTTTTTCTTCTGTTTCATGATGTTGATGAACGACTGGTCGACAATTTGGGCGATGTC
GTTTATGGCGTCCATTTTCCTTCATATTCTCTTAGTGCACGATACGAGAGTGATGGCGTTACAAGCCCTATTCTCGGTGT
TAATGGCTTATCTCGCGGTATATGGTTTGACAGATTTTCGTCCGACCACTTTGATTGAGTGGCAATACGTACCGATTTTT
TTGTTCACTTATGTGTTTGGGAATTTGTGTTTTTTCCGTAACCAGATTTCTCACGAAACCAAAGTCTCGATTGCTAAAAC
CTTTGGTGCTGGGATTGCTCATGAGATGCGTAATCCACTTAGTGCACTAAAAACGTCGATTGATGTTGTACGAACCATGA
TCCCTAAACCGCAAGTCGCGGCGCATGCGGATTATTCCTTGGATGCGCAAGAGCTGGATCTGCTGCATCAAATTTTGAAT
GAAGCTGATGATGTCATCTACTCTGGCAATAACGCGATTGATTTACTGCTCACCTCGATTGATGAAAACCGTGTCTCTCC
GGCGAGTTTTAAAAAACACTCAGTGGTAGATGTGATTGAAAAAGCGGTGAAAACTTTTCCGTATAAAAATGCTGCGGATC
AGCATTCGGTACAACTTGCAGTACACCAGCCGTTTGAGTTCTTTGGAAGTGATACTCTGCTTACTTATGCGCTATTTAAC
CTGTTGAAAAATGCCTTTTATTACCAAAAAGAGCATTTATCTGTCCGTATTGAAATCGGTCAAACTCGTGAACACAACTT
CATTCGAGTCCGTGATAACGGAGTGGGTATTGCCCCTGAGATGTTGGAAGACATTTTCCGTGATTTCTATACCTTCGGTA
AAAATGGCAGCTATGGGCTAGGCTTGCCATTTTGCCGCAAAGTGATGACAGCATTTGGCGGCGCGATTCGCTGTGCGTCT
CAACAAGGTCAATGGACAGAGTTTATATTGACCTTTCCTCGTTACGATTCCGACACAGTCGACGAGATAAAAACAGAACT
GCTGAAAACCAAATCGCTTATTTATATCGGTTCAAACCAAACCATTGTTCGAGAGTTAAATCAGCTCGCAGTGGAAGATG
AGTTTGGCTTTACCGCCATTTCTGCACAGCAAGCAGTAAGACGTCAAGACTATGAATTTGAGTTTGATCTTATTTTGCTC
GATCTTGATGACGCGACAACACAGGGGGAAATACTGCCGAAATTGGAGGGGACATTGAGTTTTACACAAGGCTGCATCGG
TTATGTGTATGACCCAGGTAAAACGTACGCGGTAAACATCAACCGTTATCTGCGCATTCAACCGATCAGTATTAACTCTA
TTCTGAGAAAGCCGCGGAAAATCATCGAACGCTTGTTGTTTGAGCAAGAGTCTTTAGCGATGAATCGTAACGTGATTCCT
CTGAAAAAGAGTCGACACGAACGTCGCATCTTGGTGGTTGATGATAATCAATCGATCCGAACTTTTACGGCTATTTTGCT
TGAACAGCAAGGTTATGAAGTAGTGCAAGCCAATGATGGCAGTGAAGTACTCAAGCATATGAATAGCCAAAACATCGACT
TAGTGTTGATGGACATTGAAATGCCAAATGTGGGGGGATTGGAAGCGACTCGCTTAATTCGTGGTTCTGAGCATGATTAC
AAAAATATTCCGATTATTGGTTACACTGGTGATAACAGCCCTAAAACCTTGGCTTTGGTACAAACTTCGGGCATGAATGA
TTTTATTGTGAAGCCTGCCGACCGAGATGTATTGCTAAATAAAGTGGCATCGTGGGTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(312-414)

Response regulator receiver domain (Response_reg)

(570-682)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

94.606

100

0.946

Multiple sequence alignment