Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   TRNA_RS26140 Genome accession   NC_006270
Coordinates   937181..938299 (+) Length   372 a.a.
NCBI ID   WP_003179978.1    Uniprot ID   Q65M68
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 932181..943299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS26120 (BL01910) - 932322..934046 (-) 1725 WP_003179977.1 T7SS effector LXG polymorphic toxin -
  TRNA_RS26125 (BL00547) - 934312..934608 (+) 297 WP_011201595.1 DUF3800 domain-containing protein -
  TRNA_RS26130 (BL00548) - 934839..935279 (-) 441 WP_009329006.1 DUF6756 family protein -
  TRNA_RS26135 (BL00083) - 935296..936855 (-) 1560 WP_011197679.1 T7SS effector LXG polymorphic toxin -
  TRNA_RS26140 (BL01908) rapC 937181..938299 (+) 1119 WP_003179978.1 Rap family tetratricopeptide repeat protein Regulator
  TRNA_RS26145 (BL05081) - 939092..940417 (+) 1326 WP_009329004.1 TGS domain-containing protein -
  TRNA_RS26150 - 940664..940882 (+) 219 WP_003179982.1 hypothetical protein -
  TRNA_RS26155 (BL00001) aroD 941270..942034 (+) 765 WP_003179983.1 type I 3-dehydroquinate dehydratase -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 43946.57 Da        Isoelectric Point: 6.5966

>NTDB_id=23861 TRNA_RS26140 WP_003179978.1 937181..938299(+) (rapC) [Bacillus licheniformis DSM 13 = ATCC 14580]
METIPSSEVGIKINRWYNEIQKLNVIEAERLKAEVHLAIERMEEDQDLLSYYQLMNFRHELMLEYLFPAEKKLSKSDYLR
EIEGQGRKLSGLLEYYFSFFTGMYHFSRGKYIKAIKAYRAAEKKLTKVSDKIEKAEFYYKMAEVFYHMKQTHMSMYYVSL
AYDIYKSYDAYVIRRINCLFVVAGNYIDLSTHDQALPHLLSAKESAEDIQNKAIVAKALLNVAYCYNAMERPTKAIEYFH
KAIDVAKEIKAKELTQAYYDLALIHFRNNENIEGRKFYEKALESARVFEDELFLCLLDVLEALFIKSANKSEVLETMKPL
RDSRGYPYLEELALEAALFYTRNERPNDSIFFYDQMVQAQKQIKRGDFLYEI

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=23861 TRNA_RS26140 WP_003179978.1 937181..938299(+) (rapC) [Bacillus licheniformis DSM 13 = ATCC 14580]
TTGGAGACTATCCCGTCTTCAGAAGTTGGAATCAAAATAAACCGCTGGTACAACGAAATTCAAAAATTAAACGTAATAGA
AGCAGAACGATTAAAGGCGGAAGTTCACTTAGCTATAGAAAGAATGGAAGAAGATCAGGACTTGCTTTCCTATTATCAGC
TTATGAATTTTAGACATGAGTTAATGTTGGAATATCTTTTCCCGGCAGAAAAAAAGCTGAGCAAATCTGATTATCTTAGG
GAAATTGAGGGACAGGGAAGAAAATTGTCAGGCTTGCTCGAATACTATTTTTCCTTTTTCACCGGAATGTATCATTTTTC
TCGCGGAAAATACATAAAGGCAATCAAGGCATATAGAGCAGCAGAAAAAAAGTTGACGAAAGTTTCAGATAAAATAGAAA
AGGCTGAATTCTATTATAAGATGGCGGAAGTGTTTTATCATATGAAACAGACTCATATGTCAATGTATTATGTGTCTCTC
GCTTATGATATTTATAAATCCTATGATGCATATGTGATTCGAAGAATTAATTGTCTATTCGTTGTTGCTGGGAATTACAT
TGATTTATCAACCCATGATCAAGCTTTACCGCATCTTTTAAGCGCTAAGGAATCCGCGGAAGACATTCAAAACAAGGCGA
TCGTTGCAAAGGCTCTTTTAAATGTAGCATATTGTTATAATGCAATGGAGAGACCAACAAAAGCTATTGAATACTTTCAT
AAGGCGATTGATGTAGCAAAGGAAATAAAGGCAAAAGAACTGACTCAGGCTTATTATGATTTGGCATTAATTCACTTTCG
AAATAACGAAAATATTGAAGGACGAAAATTTTATGAAAAGGCGCTTGAAAGTGCGCGGGTATTTGAAGATGAATTATTCC
TGTGTCTGTTGGATGTTTTAGAGGCACTGTTTATAAAATCAGCTAATAAGTCAGAGGTACTAGAAACAATGAAACCATTA
CGGGATAGTCGTGGTTACCCCTATCTTGAGGAACTGGCATTAGAAGCAGCTCTATTCTATACTAGGAATGAGCGGCCAAA
TGATTCCATATTTTTTTATGATCAGATGGTGCAGGCTCAGAAACAAATCAAAAGGGGCGACTTTCTGTATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(3-64)

Tetratricopeptide repeat (TPR_12)

(215-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65M68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

37.5

100

0.379
  rapF Bacillus subtilis subsp. subtilis str. 168

36.702

100

0.371

Multiple sequence alignment