Detailed information    

insolico Bioinformatically predicted

Overview


Name   letA   Type   Regulator
Locus tag   LPL_RS12980 Genome accession   NC_006369
Coordinates   2940560..2941219 (-) Length   219 a.a.
NCBI ID   WP_011216518.1    Uniprot ID   -
Organism   Legionella pneumophila str. Lens     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2935560..2946219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPL_RS12965 (lpl2568) - 2936513..2937172 (+) 660 WP_011216515.1 hypothetical protein -
  LPL_RS12970 (lpl2569) lcl 2937340..2938668 (+) 1329 WP_011216516.1 collagen-like adhesin Lcl -
  LPL_RS12975 (lpl2570) uvrC 2938692..2940548 (-) 1857 WP_011216517.1 excinuclease ABC subunit UvrC -
  LPL_RS12980 (lpl2571) letA 2940560..2941219 (-) 660 WP_011216518.1 two-component system response regulator LetA Regulator
  LPL_RS12985 (lpl2572) phhA 2941344..2942162 (-) 819 WP_011216519.1 phenylalanine 4-monooxygenase -
  LPL_RS12990 (lpl2573) - 2942603..2943700 (+) 1098 WP_011216520.1 competence/damage-inducible protein A -
  LPL_RS12995 (lpl2574) cgtA 2943659..2944684 (-) 1026 WP_011216521.1 Obg family GTPase CgtA -
  LPL_RS13000 (lpl2575) rpmA 2944898..2945176 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  LPL_RS13005 (lpl2576) rplU 2945189..2945500 (-) 312 WP_011216522.1 50S ribosomal protein L21 -

Sequence


Protein


Download         Length: 219 a.a.        Molecular weight: 24556.49 Da        Isoelectric Point: 5.1572

>NTDB_id=23861 LPL_RS12980 WP_011216518.1 2940560..2941219(-) (letA) [Legionella pneumophila str. Lens]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQESQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=23861 LPL_RS12980 WP_011216518.1 2940560..2941219(-) (letA) [Legionella pneumophila str. Lens]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTGGTTGCAGATGCTGAAAGTGGTGAGCAGGCTTTGGCCTATGTGAAAACCCACTCCCCTGATGTCGTATTATTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACACGTCGCTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCA
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGTGCTATGGGATACCTTACTAAAGAGTCCGG
GGCTGAAGAAATGGCTGCCGCAATTCGTAAAGTGGCCAAAGGTGAGAAATATCTTAGTGCCGAGATAGCACAAAAAATGG
CAATTAATAGTCTCCAGGAGTCTCAGGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACTAGCGGCATGAATGTACAAGACATTGCTGATAGATTATTTTTAAGTAGTAAAACCATCAATGGCTATCGATATAGGAT
GTTTGAAAAATTGGGGATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAGCACCCCAATG
ATTTGTCACAAGATGATTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

99.543

100

0.995

  letA Legionella pneumophila strain ERS1305867

99.543

100

0.995


Multiple sequence alignment