Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   LL14B4_RS04425 Genome accession   NZ_CP028160
Coordinates   909702..910331 (+) Length   209 a.a.
NCBI ID   WP_003131402.1    Uniprot ID   Q9CH48
Organism   Lactococcus lactis subsp. lactis strain 14B4     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 904702..915331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL14B4_RS04400 (LL14B4_04395) - 904990..906189 (+) 1200 WP_012897536.1 FtsW/RodA/SpoVE family cell cycle protein -
  LL14B4_RS13545 - 906220..906507 (+) 288 WP_230315831.1 hypothetical protein -
  LL14B4_RS04405 (LL14B4_04400) - 906510..907517 (+) 1008 WP_239449893.1 LCP family protein -
  LL14B4_RS04410 (LL14B4_04405) rpsN 907615..907884 (+) 270 WP_033900110.1 30S ribosomal protein S14 -
  LL14B4_RS04415 (LL14B4_04410) liaF 908050..908679 (+) 630 WP_012897539.1 cell wall-active antibiotics response protein LiaF -
  LL14B4_RS04420 (LL14B4_04415) - 908676..909674 (+) 999 WP_109990769.1 sensor histidine kinase -
  LL14B4_RS04425 (LL14B4_04420) vraR 909702..910331 (+) 630 WP_003131402.1 LuxR C-terminal-related transcriptional regulator Regulator
  LL14B4_RS04430 (LL14B4_04425) - 910402..911208 (+) 807 WP_109990770.1 Cof-type HAD-IIB family hydrolase -
  LL14B4_RS04435 (LL14B4_04430) - 911311..911901 (+) 591 WP_012897543.1 peptidylprolyl isomerase -
  LL14B4_RS04440 (LL14B4_04435) - 911903..912334 (+) 432 WP_003131405.1 CvfD/Ygs/GSP13 family RNA-binding post-transcriptional regulator -
  LL14B4_RS04445 (LL14B4_04440) - 912331..912936 (+) 606 WP_003131406.1 TVP38/TMEM64 family protein -
  LL14B4_RS04450 (LL14B4_04445) - 913157..914401 (+) 1245 WP_033900106.1 FtsW/RodA/SpoVE family cell cycle protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23204.85 Da        Isoelectric Point: 5.3572

>NTDB_id=238595 LL14B4_RS04425 WP_003131402.1 909702..910331(+) (vraR) [Lactococcus lactis subsp. lactis strain 14B4]
MEKIKLLIVDDHQMVRLGLSSFMNIQPDIEVVGEAADGESGFLKTEMLDPDVILMDLVMDRLDGIGATQKILAKNPERKI
LILTSFIDDEKVFPALAAGAKGYILKTSQAADIASAIRKVANGEDVLSDAVKEKIAQQKHRKHELYDDLSKRELEVLKVL
ATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQHHLV

Nucleotide


Download         Length: 630 bp        

>NTDB_id=238595 LL14B4_RS04425 WP_003131402.1 909702..910331(+) (vraR) [Lactococcus lactis subsp. lactis strain 14B4]
ATGGAAAAAATTAAACTTTTAATTGTTGATGACCACCAGATGGTGCGACTAGGTTTATCAAGTTTCATGAATATTCAACC
CGATATCGAAGTGGTTGGTGAAGCTGCCGATGGCGAGTCAGGATTTTTAAAAACTGAAATGCTTGACCCTGATGTTATTC
TCATGGATTTAGTGATGGATCGACTTGATGGAATTGGAGCAACGCAAAAGATTTTAGCCAAAAATCCAGAACGAAAAATT
TTAATTCTAACCAGTTTTATTGATGACGAAAAAGTTTTTCCAGCTTTAGCTGCTGGAGCTAAAGGTTATATTCTTAAAAC
ATCACAAGCCGCTGATATTGCATCTGCAATCAGAAAAGTTGCCAATGGAGAAGATGTCCTTTCCGATGCTGTCAAGGAAA
AGATTGCTCAACAAAAACATCGAAAACATGAATTATATGATGATTTATCAAAAAGAGAATTAGAAGTATTAAAAGTACTT
GCGACGGGACTTTCTAATCAAGAAATTGCTGATGAACTTTTTATCAGTTTAAAAACGGTCAAAACTCATGTTTCTAATAT
TTTTAATAAGCTTGAAGTGTCAGACCGAACTCAAGCAACAATTTATGCCATTCAACATCACTTAGTTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-117)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CH48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

53.883

98.565

0.531
  degU Bacillus subtilis subsp. subtilis str. 168

38.496

100

0.416