Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   C9I27_RS09870 Genome accession   NZ_CP028148
Coordinates   1924104..1925210 (+) Length   368 a.a.
NCBI ID   WP_002991449.1    Uniprot ID   Q48QL2
Organism   Streptococcus pyogenes strain TJ11-001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1919104..1930210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I27_RS09845 hasA 1919760..1921019 (+) 1260 WP_002991440.1 hyaluronan synthase HasA -
  C9I27_RS09850 hasB 1921055..1922263 (+) 1209 WP_002991442.1 UDP-glucose 6-dehydrogenase HasB -
  C9I27_RS09860 hasC 1922445..1923359 (+) 915 WP_002991444.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  C9I27_RS09865 yaaA 1923689..1924102 (+) 414 WP_002991446.1 S4 domain-containing protein YaaA -
  C9I27_RS09870 recF 1924104..1925210 (+) 1107 WP_002991449.1 DNA replication/repair protein RecF Machinery gene
  C9I27_RS09875 - 1925267..1926130 (-) 864 WP_002991450.1 GRP family sugar transporter -
  C9I27_RS09880 guaB 1926333..1927814 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  C9I27_RS09885 trpS 1928122..1929144 (-) 1023 WP_002991455.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41780.70 Da        Isoelectric Point: 8.4064

>NTDB_id=238565 C9I27_RS09870 WP_002991449.1 1924104..1925210(+) (recF) [Streptococcus pyogenes strain TJ11-001]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDNLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQVDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=238565 C9I27_RS09870 WP_002991449.1 1924104..1925210(+) (recF) [Streptococcus pyogenes strain TJ11-001]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGCCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTGGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATAACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAACCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTAACAAAAGGAACCGTTCAAGTTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q48QL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.842

99.457

0.625
  recF Bacillus subtilis subsp. subtilis str. 168

45.455

100

0.462