Detailed information NTG0238544

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: CCX84_RS19825
• Genome accession: NZ_CP022345
• Coordinates: 3704958..3707558 (-)
• Length: 866 a.a.
• NCBI ID: WP_000365398.1
• Uniprot ID: A0A9W3L475
• Organism: Bacillus thuringiensis strain c25
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3699958..3712558

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CCX84_RS19795	fabF	3700289..3701527 (-)	1239	WP_000412656.1	beta-ketoacyl-ACP synthase II	-
CCX84_RS19800	fabH	3701559..3702491 (-)	933	WP_001100533.1	beta-ketoacyl-ACP synthase III	-
CCX84_RS19805	comZ	3702712..3702888 (-)	177	WP_001986215.1	ComZ family protein	Regulator
CCX84_RS19810	-	3702943..3703815 (-)	873	WP_001986101.1	NAD(P)-dependent oxidoreductase	-
CCX84_RS19815	-	3703845..3704579 (-)	735	WP_000028714.1	hydrolase	-
CCX84_RS19820	-	3704736..3704918 (+)	183	WP_001211116.1	YjzD family protein	-
CCX84_RS19825	clpC	3704958..3707558 (-)	2601	WP_000365398.1	ATP-dependent chaperone ClpB	Regulator
CCX84_RS19830	-	3707768..3707947 (-)	180	WP_000531421.1	YjzC family protein	-
CCX84_RS19840	-	3708439..3709248 (+)	810	WP_001041232.1	Cof-type HAD-IIB family hydrolase	-
CCX84_RS19845	-	3709354..3709494 (+)	141	WP_000516816.1	hypothetical protein	-
CCX84_RS19850	-	3709495..3709692 (+)	198	WP_000527407.1	DUF3813 domain-containing protein	-
CCX84_RS19855	-	3709718..3710575 (-)	858	WP_000364431.1	YitT family protein	-
CCX84_RS19860	-	3710676..3710807 (+)	132	WP_001120851.1	DUF3941 domain-containing protein	-
CCX84_RS19865	prsA	3710937..3711794 (+)	858	WP_061139702.1	peptidylprolyl isomerase PrsA	-

Sequence

Protein

• Length: 866 a.a.
• Molecular weight: 97391.35 Da
• Isoelectric Point: 5.1555

>NTDB_id=238544 CCX84_RS19825 WP_000365398.1 3704958..3707558(-) (clpC) [Bacillus thuringiensis strain c25]
MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLLALLEEQDGLAVRIFQKMNVDIEALKQGAESLIKKKPSVTGSGAE
VGKLYVTSALQQLLVRAGKEAEKLQDDYISVEHVLLAFSEEKGDINQLFTRLHITKDNLLQSLMTVRGNQRVTSQNPEAT
YEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLKDRTI
FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD
EYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA
CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKETDRGSQERLKTLQHELSDLKEVASGMRAKWEKEKEDIHKVRDLRE
HLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGAHNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEG
EREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSAHLLDGLEEDGSIKEESRELVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHIT
VELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVVDVENNELVVHVK

Nucleotide

• Length: 2601 bp

>NTDB_id=238544 CCX84_RS19825 WP_000365398.1 3704958..3707558(-) (clpC) [Bacillus thuringiensis strain c25]
ATGGACTTAAATCAAATGACAACAAAAACACAAGAGGCGATTATGAGTGCCCAATCTTTAGCGGTATCTCATCATCACCA
AGAGGTGGATACTGTTCATCTATTACTTGCATTATTAGAAGAGCAAGATGGATTAGCAGTACGTATATTTCAAAAAATGA
ATGTTGATATAGAAGCATTAAAGCAAGGTGCTGAAAGTTTAATTAAAAAGAAACCTTCTGTAACGGGGAGCGGTGCAGAA
GTTGGAAAATTGTATGTAACGAGCGCTCTGCAACAACTGCTTGTAAGAGCAGGGAAAGAAGCAGAAAAACTGCAGGATGA
TTACATTTCAGTAGAACATGTGTTGCTTGCTTTTTCTGAAGAAAAGGGCGATATAAATCAATTATTTACAAGATTGCATA
TTACGAAAGATAACTTATTACAGTCTTTAATGACAGTTCGGGGGAATCAAAGAGTGACGAGTCAAAATCCAGAAGCAACT
TATGAAGCGTTAGAAAAATATGGCCGTGATTTAGTGGCGGAAGTGAGAGCAGGGAAAATCGATCCTGTAATCGGCCGTGA
TAGTGAAATACGACGTGTAATCCGTATTCTTTCACGTAAAACGAAAAACAATCCTGTTTTAATTGGGGAGCCAGGTGTTG
GTAAAACAGCAATCGTTGAAGGGCTAGCACAGCGTATTGTGAAAAAAGATGTACCTGAAGGATTGAAAGATAGAACGATT
TTTGCGTTAGATATGAGTGCGCTCGTAGCAGGTGCGAAATTCCGTGGTGAGTTCGAAGAGCGTCTGCAAGCTGTATTAAA
TGAAATTAAAAAGAGTGAAGGCCGCATTTTATTATTCATTGATGAACTTCATACAATAGTTGGAGCTGGTAAAACTGAAG
GTGCGATGGATGCAGGAAATATGTTAAAACCGATGCTTGCGCGTGGTGAACTGCATTGTATCGGGGCGACGACGCTCGAT
GAATATCGCAAATATATTGAGAAAGATCCAGCGCTAGAAAGACGTTTCCAACAAGTATTAGCAGAAGAACCAACTGTTGA
AGATACAATTTCAATTTTACGCGGATTAAAAGAACGCTTTGAAATTTATCACGGTGTAAATATTCATGACCGTGCGATTG
TAGCAGCGTCAGTTTTATCAGATCGATATATTTCAGATCGATTCTTACCTGACAAAGCAATTGACCTTGTTGATGAAGCG
TGTGCAACAATTCGTACAGAAATCGATTCTATGCCAACAGAATTAGATGAAGTAACGCGCCGCATTATGCAGCTGGAAAT
TGAAGAAGCGGCTCTTGGAAAAGAAACGGATCGTGGTAGCCAAGAACGTCTAAAAACATTGCAACATGAATTATCGGATT
TAAAAGAAGTTGCAAGTGGTATGAGAGCAAAGTGGGAGAAAGAAAAAGAAGACATTCACAAAGTTCGTGACTTACGTGAA
CATTTAGAACGTCTGCGTCGTGAATTAGAAGAAGCAGAAGGCAATTACGATTTAAATAAAGCAGCCGAACTTCGTCACGG
GAAAATTCCAGCAATTGAAAAAGAGTTAAAAGAAGCGGAAGAAATGGGCGCGCATAATAAACAAGAAAATCGTTTATTAC
GTGAGGAAGTAAGTGAAGAAGAAATTGCAGATATTGTTTCACGGTGGACTGGTATTCCTGTTGCGAAACTCGTGGAAGGT
GAACGCGAGAAATTATTACGCTTAGAGCAAATCTTATCAGAGCGTGTCATCGGACAAGAGGAAGCAGTAAGCTTAGTGTC
AGACGCAGTTCTTCGTGCTCGCGCTGGTATTAAAGATCCGAACCGCCCGATTGGTTCTTTCATCTTCTTAGGACCAACAG
GTGTTGGTAAAACAGAACTTGCAAAAACGTTAGCGCAGTCTTTATTCGATAGTGAAGAGCAAATGATTCGTATCGATATG
TCTGAGTATATGGAGAAACACGCTGTGTCACGCTTAATTGGTGCGCCTCCTGGATATGTTGGGTATGAAGAGGGCGGTCA
ATTAACAGAAGCGGTAAGACGTAAACCGTATTCCGTTATTTTATTAGACGAAATCGAAAAAGCACATCCAGAAGTATTTA
ACATTTTATTACAAATGTTAGATGATGGACGCATTACAGATTCGCAAGGACGTACAGTGGACTTTAAAAACACAGTTATT
ATTATGACTTCAAATATTGGATCTGCTCATTTATTAGATGGATTAGAAGAAGATGGATCAATTAAAGAAGAATCAAGAGA
ACTTGTGATGGGACAATTAAGAGGACATTTCCGACCGGAGTTTTTAAACCGTGTCGACGAAATTATTTTATTCAAACCTC
TTACAACGAATGAAATTAAAGGCATTGTTGATAAAATTGTAAAAGAACTACAAGGTCGTCTAGCTGACCGTCACATTACA
GTAGAATTAACAGATGCAGCAAAAGAATTTGTTGTGGAAGCTGGTTTCGACCCAATGTACGGAGCTCGTCCATTAAAACG
ATACGTACAACGTCAAGTGGAAACGAAATTAGCACGAGAATTAATTGCAGGAACAATTACTGACAATAGTCACGTAGTTG
TTGATGTAGAAAATAACGAATTAGTCGTTCATGTGAAATAA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (206-339)

• AAA lid domain (AAA_lid_9) (345-447)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-148)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• AAA domain (Cdc48 subfamily) (AAA_2) (602-768)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (774-854)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.771	100	0.483
clpC	Lactococcus lactis subsp. cremoris KW2	47.199	82.448	0.389