Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   C9I27_RS07945 Genome accession   NZ_CP028148
Coordinates   1525383..1526417 (-) Length   344 a.a.
NCBI ID   WP_002988663.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TJ11-001     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1520383..1531417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I27_RS10065 - 1520709..1520864 (-) 156 WP_002988678.1 hypothetical protein -
  C9I27_RS07910 - 1521139..1521540 (+) 402 WP_011285676.1 helix-turn-helix domain-containing protein -
  C9I27_RS07915 - 1521554..1521937 (+) 384 WP_002988673.1 ImmA/IrrE family metallo-endopeptidase -
  C9I27_RS07920 - 1521948..1522499 (+) 552 WP_002988670.1 hypothetical protein -
  C9I27_RS07925 - 1522616..1523695 (+) 1080 WP_002988667.1 site-specific integrase -
  C9I27_RS07935 trmB 1523893..1524528 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  C9I27_RS07940 ccrZ 1524528..1525319 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  C9I27_RS07945 pptB 1525383..1526417 (-) 1035 WP_002988663.1 ABC transporter permease Regulator
  C9I27_RS07950 pptA 1526420..1527145 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  C9I27_RS07955 - 1527217..1527636 (+) 420 WP_002988659.1 HIT family protein -
  C9I27_RS07960 - 1527633..1527989 (+) 357 WP_002988657.1 hypothetical protein -
  C9I27_RS07965 brpA 1528100..1529380 (-) 1281 WP_002988654.1 biofilm formation/cell division transcriptional regulator BrpA -
  C9I27_RS07970 - 1529389..1529913 (-) 525 WP_002988650.1 GNAT family N-acetyltransferase -
  C9I27_RS07975 tsaE 1529888..1530349 (-) 462 WP_002988647.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40241.47 Da        Isoelectric Point: 10.4168

>NTDB_id=238543 C9I27_RS07945 WP_002988663.1 1525383..1526417(-) (pptB) [Streptococcus pyogenes strain TJ11-001]
MKALFLKRRQNFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=238543 C9I27_RS07945 WP_002988663.1 1525383..1526417(-) (pptB) [Streptococcus pyogenes strain TJ11-001]
ATGAAAGCATTATTTCTGAAACGCCGTCAAAACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTTTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATTCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43

  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427


Multiple sequence alignment