Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CFN79_RS15805 Genome accession   NZ_CP022344
Coordinates   3347970..3348764 (+) Length   264 a.a.
NCBI ID   WP_104947080.1    Uniprot ID   -
Organism   Chromobacterium vaccinii strain XC0014     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3342970..3353764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFN79_RS15775 (CFN79_15720) - 3343015..3343764 (-) 750 WP_104947074.1 metallophosphoesterase -
  CFN79_RS15780 (CFN79_15725) - 3343789..3344442 (-) 654 WP_234004374.1 HD domain-containing protein -
  CFN79_RS15785 (CFN79_15730) - 3344584..3345432 (-) 849 WP_104947076.1 GNAT family N-acetyltransferase -
  CFN79_RS15790 (CFN79_15735) - 3345429..3346040 (-) 612 WP_104947077.1 AraC family transcriptional regulator -
  CFN79_RS15795 (CFN79_15740) pgeF 3346147..3346884 (-) 738 WP_104947078.1 peptidoglycan editing factor PgeF -
  CFN79_RS15800 (CFN79_15745) rluD 3346874..3347971 (-) 1098 WP_104947079.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CFN79_RS15805 (CFN79_15750) comL 3347970..3348764 (+) 795 WP_104947080.1 outer membrane protein assembly factor BamD Machinery gene
  CFN79_RS15810 (CFN79_15755) - 3348830..3349861 (-) 1032 WP_104947081.1 NAD(P)H-dependent flavin oxidoreductase -
  CFN79_RS15815 (CFN79_15760) - 3349941..3350132 (+) 192 WP_021477861.1 hypothetical protein -
  CFN79_RS15820 (CFN79_15765) rpsB 3350294..3351022 (+) 729 WP_021477860.1 30S ribosomal protein S2 -
  CFN79_RS15825 (CFN79_15770) tsf 3351096..3351962 (+) 867 WP_104947082.1 translation elongation factor Ts -
  CFN79_RS15830 (CFN79_15775) pyrH 3352053..3352772 (+) 720 WP_021477858.1 UMP kinase -
  CFN79_RS15835 (CFN79_15780) frr 3352848..3353405 (+) 558 WP_031296594.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30386.54 Da        Isoelectric Point: 8.4963

>NTDB_id=238504 CFN79_RS15805 WP_104947080.1 3347970..3348764(+) (comL) [Chromobacterium vaccinii strain XC0014]
MKRYVVAAMLVMVGLAGCATTETYDETRGWTVEKLYSEAHDELNSGNYTRAVKLYETLEARFPYGRYAQQAQMDLAYTHY
KDGEPELAIASADRFIKLHPTHPNIDYIYYLKGLVYYNDDSGLLAKWAGQDMSERDPRAAREAFSAFRELTTRFPNSTYA
PDAKAKMIRLVDALGGNEMHVARYYMKRGAYLAAANRAQGVVKDYSNTKYPEEALAIMVSAYDKLQLPKLRDDARRVLAL
NYPQSQYLSKSWTVEEMPWWKLWK

Nucleotide


Download         Length: 795 bp        

>NTDB_id=238504 CFN79_RS15805 WP_104947080.1 3347970..3348764(+) (comL) [Chromobacterium vaccinii strain XC0014]
ATGAAAAGATACGTTGTTGCAGCTATGTTGGTGATGGTGGGGCTTGCCGGGTGTGCAACCACGGAAACCTACGACGAAAC
GCGCGGTTGGACCGTGGAGAAGCTCTATTCGGAAGCTCACGATGAGTTGAACAGCGGTAATTATACTCGCGCAGTCAAGC
TGTATGAAACGCTGGAAGCGCGCTTTCCCTATGGACGCTACGCGCAGCAGGCCCAAATGGACCTGGCCTACACCCATTAC
AAGGACGGCGAGCCCGAGCTGGCCATCGCCTCCGCCGATCGCTTCATCAAGCTGCATCCTACACATCCGAACATCGACTA
CATCTATTATCTGAAGGGTTTGGTGTATTACAACGATGATTCCGGCCTGCTCGCCAAATGGGCCGGCCAGGACATGAGCG
AACGCGATCCGCGCGCCGCCCGCGAGGCCTTCTCCGCTTTCCGCGAGCTGACCACCCGTTTCCCCAATAGCACCTACGCG
CCGGACGCCAAGGCGAAGATGATCCGCCTGGTGGACGCGCTGGGCGGCAACGAGATGCACGTGGCGCGCTACTACATGAA
GCGCGGCGCCTATCTGGCCGCGGCCAACCGTGCCCAGGGCGTGGTCAAGGACTACTCCAACACCAAGTATCCGGAAGAGG
CGCTGGCCATCATGGTGTCGGCCTACGACAAGCTGCAGCTGCCGAAGCTGCGCGACGACGCGCGCCGCGTGCTGGCGCTC
AACTATCCGCAGAGCCAGTACCTGAGCAAGTCGTGGACGGTCGAAGAGATGCCGTGGTGGAAACTGTGGAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(32-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

58.427

100

0.591
  comL Neisseria gonorrhoeae MS11

57.303

100

0.58

Multiple sequence alignment