Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   TRNA_RS21670 Genome accession   NC_006270
Coordinates   33141..33737 (+) Length   198 a.a.
NCBI ID   WP_003178140.1    Uniprot ID   A0ABM6LBC6
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 28141..38737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS21650 (BL02370) - 29478..30026 (-) 549 WP_223307098.1 cysteine hydrolase family protein -
  TRNA_RS21655 (BL02356) tadA 30109..30591 (+) 483 WP_009330054.1 tRNA adenosine(34) deaminase TadA -
  TRNA_RS21660 (BL02357) dnaX 31077..32777 (+) 1701 WP_009330055.1 DNA polymerase III subunit gamma/tau -
  TRNA_RS21665 (BL02358) - 32804..33127 (+) 324 WP_003178138.1 YbaB/EbfC family nucleoid-associated protein -
  TRNA_RS21670 (BL02359) recR 33141..33737 (+) 597 WP_003178140.1 recombination protein RecR Machinery gene
  TRNA_RS21675 (BL02360) - 33758..33982 (+) 225 WP_003178142.1 YaaL family protein -
  TRNA_RS21680 (BL02361) - 34047..34313 (+) 267 WP_003178144.1 pro-sigmaK processing inhibitor BofA family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22007.62 Da        Isoelectric Point: 5.3504

>NTDB_id=23841 TRNA_RS21670 WP_003178140.1 33141..33737(+) (recR) [Bacillus licheniformis DSM 13 = ATCC 14580]
MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLSMKEDVVLDFAKALVNAKRNLTYCSVCGHITDQDPCYICEDTRRDKS
VICVVQDPKDVIAMEKMKEYNGLYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLL
KPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=23841 TRNA_RS21670 WP_003178140.1 33141..33737(+) (recR) [Bacillus licheniformis DSM 13 = ATCC 14580]
ATGCAGTATCCTGAACCAATATCAAAGCTGATTGACAGCTTTATGAAATTGCCAGGAATCGGACCCAAGACGGCGGTCCG
TCTGGCTTTTTTTGTTCTTAGTATGAAAGAAGACGTCGTGTTAGATTTTGCAAAAGCATTGGTAAACGCAAAGCGCAATT
TGACATATTGCTCGGTCTGCGGACATATAACAGATCAAGATCCTTGCTATATTTGTGAAGATACGAGAAGAGACAAATCG
GTCATATGTGTTGTTCAGGATCCCAAAGATGTCATTGCTATGGAGAAAATGAAGGAGTACAACGGACTGTACCATGTTTT
GCATGGAGCGATTTCTCCGATGGACGGCATCGGTCCGGAAGATATTAAAATACCCGAATTGCTGAAGCGGTTGCAGGATG
ATCAGGTGACTGAAGTCATTCTCGCGACAAACCCGAATATAGAAGGAGAAGCAACGGCCATGTACATTTCAAGGCTTTTA
AAGCCGTCTGGTATCAAGCTGTCACGAATTGCCCATGGACTTCCGGTCGGAGGCGATTTGGAGTATGCAGATGAAGTCAC
TCTTTCTAAAGCGCTTGAAGGCAGACGTGAAATGTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

98.485

100

0.985
  recR Streptococcus pneumoniae R6

61.616

100

0.616
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.551

98.99

0.52

Multiple sequence alignment